Pcoq007308.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- MBD2
- Assembly
- GCA_001932985.1
- Location
- MNCL01000015.1:1820923-1822321[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-22 1.4e-18 66.8 0.0 2 73 6 72 5 75 0.90 2 2 0.00034 1.8 8.8 0.0 29 74 122 175 91 178 0.86
Sequence Information
- Coding Sequence
- atgaacgtaAACATTGAGCGTAGGAAAACAGAATGCAACGCTTTACCGAAAGGCTGGCAGCGCGAGGAAGTTCTAAGGAAAACAGGACTGTCTGCAGGGAAGGTCGATGTTTACTATTACAGTCCCACCgggaaaaaaatcgaaaataaaccACAACTAGCTCGCCAACTAGGCGACGTCCTAGATGTATCAACATTCGATTTTCGTACTGGCAAATTATTACCACATGCCCAACAAATTTCTGTCCAACGAACAGCAAGCTCCCTCAAGCGAAAATTGCCCGCTGGAACGACGGCTATTTGTAACCCTAGCAGTAGTAATATGTCTTCAGCGTTTCGCCATCATCTAGAACTCAGccgAGGAATGCGAAACGACATATCGCTTGTGCCCCCGATCCGCCAAACAGCCTCTATATTTAAGCAGCCAGTCACAACGGTCAAGAACCAAGAAGGGAAGGTCAAGCATGACTTGAAGAACGTGTCGCAGGAAAAGCCCAAACAGCTCTTCTGGGAAAAGCGTCTAGAAGGCCTGAGAGCTTGTGATATCAGTGGAGCAGAATATGAATCAATAGATCTGCCCAAAGGCATAAAGGCTGTCGGTCCTAATGTCGGCGAGCACACAGTTCTTCAGTCGGTTGCAACAGCCCTCCATATCTCCAATCAACCTGTGACTGGACAGACTGCTCCAAAAACTACCCTCACTACCAACTCTGGGGTCTTTCTGAACCCCGAGCAACCCTTGATGCATGTGATAGCAATCACGGACGACGATATACGCAAGCAGGAGGAGCGGGTAACTTTGGCTCGGCGGAGACTCCAAGAGGCTTTAAAGGGTTTAAATTTTAGCTGA
- Protein Sequence
- MNVNIERRKTECNALPKGWQREEVLRKTGLSAGKVDVYYYSPTGKKIENKPQLARQLGDVLDVSTFDFRTGKLLPHAQQISVQRTASSLKRKLPAGTTAICNPSSSNMSSAFRHHLELSRGMRNDISLVPPIRQTASIFKQPVTTVKNQEGKVKHDLKNVSQEKPKQLFWEKRLEGLRACDISGAEYESIDLPKGIKAVGPNVGEHTVLQSVATALHISNQPVTGQTAPKTTLTTNSGVFLNPEQPLMHVIAITDDDIRKQEERVTLARRRLQEALKGLNFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00717805;
- 90% Identity
- iTF_01049671;
- 80% Identity
- -