Pcoq021135.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001932985.1
- Location
- MNCL01000060.1:107847-114181[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-111 5.5e-107 358.1 34.3 1 299 106 390 106 391 0.91 2 2 0.0015 39 3.9 4.0 207 247 407 446 393 464 0.78
Sequence Information
- Coding Sequence
- ATggcagaaaataatgaaagttttaCAGACGAAAACTGTGCgacaaataatgaaaattctattgCAACTTTAAATACAAGTTATGGTGATTTTAAAGGTTGTgataatgaaattcaaaaattcacagAAGACAAGACCGGATGTGAAaagtttgaagaaatttcgaataaaatatgtGGAGACGCGATGAGGCCTAGCGAACACATATCAAGGAGTCTTCTTGATGAAGTTGATGTAGGCAATGATATTGACTCACATTATAGCGAAGACGAAGATGAATTCATCGTTGATTTTCTCGGGAAAATAAGTGATATTgCGGAGGCTAGATTGGCTGCGCGACGGCAGGCACGCGCAGAGGCGCGTGAAATTCGAATGCGGGAACTAGAACGTCAGCAAAGAGAGCAAGAACAAAATGCTGATCGCGTATTCGATATGCAGACGGTGGCTGGGATCGATCCTTTATCTAGATCCCGGCTAAACATGTCAAATAATTCTGGAAGAGGTACTTCGATGTCTTCAAGACGAAGTAGCGAAGATTCTCTCGAAGAAGAAAGTAGAAGTTTACGTGATATTAGGCATGAGCTTAAGGATGTTGAAGAACGTTTTAGGAAAGCAATGATAGCAAATGCACAGTTAGATAATGAACGAGCCTCACAATCATACCAAATCCAATTGCTAAAAGATAAGTTGGAAGAAATGGAAGAATCGTTTGCGCAACTTCAGAgagaatataaagaaaaatgtcgtGATCATAAcgctttaaaaagaaattatgataaattagAAGAAGAATTAAAACTAGTTCGTGGACAATTAGATGAAAGAGATACTCTAATAGCTGAGCAGGGTTTAGTTATAGTTCTGGTAGAAAATCAAGATGGCTCGGATGCCAGGCGCGCTCTAGTCAGTATGGAGAATGCACAACTATTAGGTTCTGTTCAAGGTTCATTAgaCGTGCGGCTTAAAAAGTTTACTGAAGAAAAGCAACAACTCCAAAAAGAAGTCCAAAGCCTTCATCAACAATTAAGCGACATTAAATCACAAGGTCGACGAGGAGGATCTCTCAATGGCCCTTTAGGAGCGGAAGACGATTATGAAGCTCAAAgagAGGCTAATAAACTTATAGCTGATTATAAATACAAGCTTCAAAAAGCCGAACAAGAAATAGCTAGTCTTCAAGCAAGTTTAGCAAGGTCTGAAACACAAGTTATAAGATATAAAAGCACCGCCGAGGTTGCTGAGAAAGCTGAAGGTGAATTGAAAATAGAACGAAGAAAACTTCAACGGGAGAACCGCGAACTGATGGAACGCTTGGAGGAACTCGAGACAACTAACAATCATTTATTGAAACGCTTAGATAAACTAAAGAATGCGAAGAGCGCACTACTCAAAGACCTCTGA
- Protein Sequence
- MAENNESFTDENCATNNENSIATLNTSYGDFKGCDNEIQKFTEDKTGCEKFEEISNKICGDAMRPSEHISRSLLDEVDVGNDIDSHYSEDEDEFIVDFLGKISDIAEARLAARRQARAEAREIRMRELERQQREQEQNADRVFDMQTVAGIDPLSRSRLNMSNNSGRGTSMSSRRSSEDSLEEESRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREYKEKCRDHNALKRNYDKLEEELKLVRGQLDERDTLIAEQGLVIVLVENQDGSDARRALVSMENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVQSLHQQLSDIKSQGRRGGSLNGPLGAEDDYEAQREANKLIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEVAEKAEGELKIERRKLQRENRELMERLEELETTNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628366;
- 90% Identity
- -
- 80% Identity
- -