Pimp005672.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- -
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000002.1:17647105-17651218[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-13 1.7e-09 38.7 0.1 3 37 121 154 119 157 0.91 2 2 8.6 2.6e+04 -3.5 0.0 30 38 183 191 183 193 0.84
Sequence Information
- Coding Sequence
- ATGAAATGTACTCTGAAAATGTCAATGTTCATCGCATGCTGCTTAGATGTAGATGTTTTAAGTTCGCTCGTTTGGGAGGTACTCAGCACGAGCACGGCCAGCAGACCTAGCAGTTACATCGAGCGCAAGTTTAGATTGAAACATATAGATCATATTGCGGGTAGGTACAAGTGTTCCAAGTGCGCCAAGTCGTATCGGTGGAAGCATCATCTCGTGGAGCACGTCAAGGCCTCATGCGGCCAGAAGAAGGCAGAGTGCTGCCCGTATTGCAGTTACAAGAGCAATCGATCATTTGCTTACGAGACCCGTTTACGAAACACGAGATATGCGATGAAATCGCGAAGATCTAAACGCGATTCGGAACAGGTGACGAGAGCCGTCGAAGCTGTTGCCGGCGGGATGTCCTTGAGGAAGGCTGCGAAGATGTACTCCATATCCAAATCGGTTCTACATCGATACAGCAAACACGATGCGTGCGCGACCAACTACTTGAATTGCCAGAGGGTTACTTACCCATGTAAGAACTGCGGCAAAATCTACAACTATTACTCCAGCCTGGCCAGGCATCTAAAGCACGAGTGCGGCGTGGAGCCCAAGTTTCACTGCCCCCTGTGCCCTTACAGAACGAAGCACAAGTCGAGTCTGAACACCCACCTAAATGGCAGGCACATGAAGCTGTTGAACGAAGTCTACCCTTCGTCCAACAGCAACAAGACGTCTTCAACGGACGCTGGGAATTGA
- Protein Sequence
- MKCTLKMSMFIACCLDVDVLSSLVWEVLSTSTASRPSSYIERKFRLKHIDHIAGRYKCSKCAKSYRWKHHLVEHVKASCGQKKAECCPYCSYKSNRSFAYETRLRNTRYAMKSRRSKRDSEQVTRAVEAVAGGMSLRKAAKMYSISKSVLHRYSKHDACATNYLNCQRVTYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLNEVYPSSNSNKTSSTDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00264194;
- 90% Identity
- iTF_01255170; iTF_00868687; iTF_00867314; iTF_00867794; iTF_00869236;
- 80% Identity
- iTF_01255170;