Basic Information

Insect: Popillia japonica
Gene Symbol: -
Assembly: GCA_004785975.1
Location: ML219518.1:12028-22024[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00071 0.11 13.8 0.8 2 23 191 213 190 213 0.95

2 20 0.027 4 8.9 0.5 1 20 343 362 343 364 0.95

3 20 0.33 49 5.4 1.4 1 19 448 466 448 471 0.94

4 20 2.1e-06 0.00031 21.8 1.8 2 23 544 565 543 565 0.97

5 20 1.6e-06 0.00024 22.2 0.9 2 23 580 601 579 601 0.97

6 20 0.0065 0.97 10.8 0.1 2 23 609 631 608 631 0.93

7 20 0.00066 0.099 13.9 0.2 2 23 636 657 636 657 0.96

8 20 0.00036 0.054 14.7 0.1 1 23 679 702 679 702 0.98

9 20 0.0017 0.25 12.6 4.0 1 23 725 747 725 748 0.95

10 20 0.0027 0.41 12.0 0.6 1 23 758 780 758 780 0.98

11 20 4.1e-07 6.1e-05 24.0 5.9 1 23 808 830 808 830 0.99

12 20 0.55 82 4.7 1.9 3 23 852 872 850 872 0.97

13 20 0.0018 0.28 12.5 0.6 1 23 910 932 910 932 0.97

14 20 0.01 1.6 10.1 0.2 2 23 946 968 945 968 0.93

15 20 0.0004 0.061 14.6 1.3 1 23 983 1005 983 1005 0.93

16 20 0.29 44 5.6 0.3 1 23 1041 1064 1041 1064 0.93

17 20 0.0059 0.88 10.9 0.5 2 23 1075 1096 1074 1096 0.96

18 20 0.00015 0.022 15.9 2.6 1 23 1103 1126 1103 1126 0.95

19 20 6.8e-05 0.01 17.0 1.9 1 23 1134 1156 1134 1156 0.99

20 20 0.00023 0.034 15.4 0.4 1 23 1174 1197 1174 1197 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00071	0.11	13.8	0.8	2	23	191	213	190	213	0.95
2	20	0.027	4	8.9	0.5	1	20	343	362	343	364	0.95
3	20	0.33	49	5.4	1.4	1	19	448	466	448	471	0.94
4	20	2.1e-06	0.00031	21.8	1.8	2	23	544	565	543	565	0.97
5	20	1.6e-06	0.00024	22.2	0.9	2	23	580	601	579	601	0.97
6	20	0.0065	0.97	10.8	0.1	2	23	609	631	608	631	0.93
7	20	0.00066	0.099	13.9	0.2	2	23	636	657	636	657	0.96
8	20	0.00036	0.054	14.7	0.1	1	23	679	702	679	702	0.98
9	20	0.0017	0.25	12.6	4.0	1	23	725	747	725	748	0.95
10	20	0.0027	0.41	12.0	0.6	1	23	758	780	758	780	0.98
11	20	4.1e-07	6.1e-05	24.0	5.9	1	23	808	830	808	830	0.99
12	20	0.55	82	4.7	1.9	3	23	852	872	850	872	0.97
13	20	0.0018	0.28	12.5	0.6	1	23	910	932	910	932	0.97
14	20	0.01	1.6	10.1	0.2	2	23	946	968	945	968	0.93
15	20	0.0004	0.061	14.6	1.3	1	23	983	1005	983	1005	0.93
16	20	0.29	44	5.6	0.3	1	23	1041	1064	1041	1064	0.93
17	20	0.0059	0.88	10.9	0.5	2	23	1075	1096	1074	1096	0.96
18	20	0.00015	0.022	15.9	2.6	1	23	1103	1126	1103	1126	0.95
19	20	6.8e-05	0.01	17.0	1.9	1	23	1134	1156	1134	1156	0.99
20	20	0.00023	0.034	15.4	0.4	1	23	1174	1197	1174	1197	0.98

Sequence Information

Coding Sequence: ATGGGCGAGGAAAGATTTGGAAATTACAGTTCCTGCTGTCGACTATGCTTGTCCGATAAAATGAACTATTTGAAGCCGATATTTGAAGACGAAGAGGAAAGTACTAGATTGGTGCATCGGATTCAGATTTTCTTAGGCGTTGAGATAtcagaaaatgataaaatttcaacaatgaTTTGCAACCAATGCCGGTCAAAGCTCAACAATTGGGAATGTTACAAATCCGAATGCACGAAGAACCAGACCAAATTACAACAGTGGCTGGGCAGTTGGAATGCTTCAGTTAGTGATAACAATATTGGGAACATGACCATCCAAGTTAAAGACGAACCAGTGGATTGCGATGACAACTCAGACATCCCACACTTGGAGGATACTACCGAAGATCAGGTGATCAACATCAAGGCAGAACCTGCGGATGGTGTCATCGATGATTATTATGAACAACCACCGCAATTGACTCCTCATACTGATTCTCGATCTCAGGACTTCGACCAATCAAATGCTTTGATGGAATTAGAAAATGGCCATGAAATCAGCTACGAAGGTGGAAGGACTGCAAACAGTAAGCAATGCACTATTTGTAATAAGCTTTTTAGCACTGCCGGTAATCGCATGAAGCATGAACGACTTATTCATGGTAATGGTGTACGAAAAGCCTTATGGGGCAGTAATGGTGccACCAACCATCAAGACGACAGCACACAACAATCAATGGATTCTTACGCAAGCAGCACCATACACACAGACGCCTCAAACGTGGACGGTGACCACGACCATCCCAATTCAAACTTGCAAAAGATACAATTCGCCGCAGGTTTACGCCTGAAACAGAAATCGCACGGCTCATCAACGCCTTCTGCTAGCGATGGATGTTTAACACAAATCGAGTTCGCTTACATCGAACGTAGTAAAGCTTTACTAGCTATGCTGCATAAATTTAGATGTGCTTGTCATAACGTATCATTCCCTACAGTTAAACGTTTATTCGCACATTTACGGATGAGTTACACTTGGTTTCCTATATTCACTTGTTACAATTGCGTGATAACGTTCTCGACGAGATCTCTAAACATGAGACATACGGGGAGATGCCCCAAACCCTACCTGGAGAATAGTATGAGGTTAGCCGAGATGCGCAAACGCAGCGAGAATAAGATACGATTGTATCAATACAGTAAGTGTATTAAATGCGAGAATTTGTACGCGTTTCACGAAGATTATTGCGACCACATCGATAAGGACCATTCCCAAGAAGCGCCGTTCGTTTGCATATGCAATAGGAAGTTCAACGGCGTCGAAGAATTCCGCCAACACGCCTATAATTCGTGTTATCTGATGTATTACTGCGACGTTTGCTATTCGGTGTTCGAAACTTTAGACGATTTTCGCGTACATTGCGAGGAAGATCACGATAAAATCGAAGATTACAGTTTCGTCACGCCGAACCCGACCTTCGCGTACGTCGACCGCGAAGAGATCAGCGCGTCGCGGAAGAGGACccacgaggaaatgcagaacgATAGTGTGGCTAGCGTCGAAGTTAACGGGGAAATTGAGGAAATCAAGCAGGAAGATGGTAACGATAGGAAGAAATTTATCCCGTCTAAACCGTACAATGAACCTACTAGTTGCGATTTATGCGATCGTAGGTTCTCGAATTATTACAGTTTGAGGAAGCATATGAAGATACACAAAAGAAGTAGCATCGCTAGCAGTTGGAAGAGCAAACCGTCCTCATGCGACAAATGCGGTAAAGTATTCTCCACATACTACAACATGATCAGACATTACAAAGTCCACGACGACGCCGAGAAACACCTGCAATGCGCTTTGTGCGACGAAAAATTCCGACTGGTATCCGAGCTAAAGGATCACTTAATCCTCGTGCACGGTAGAGCGAACGTTTGTCAAGAATGCGGACGACAGTTCGAATCCGTTAAAGAATTAGAACAGCACAGGAGCGTCCATTTGAATATTAAAGTTTACAGAGACTCGAAAACGCAATCTTACCGTACCGGAACTAAACCTAGATACACCTGCGATCTTTGCGAGAACGTTTTCGATACAGAATCGGAATTGAGCGATCACATAGAGACGATGCATAACGGTATGTCGCCGGCTACGGAGACTAAACCGCCTAGGGAGACTTTACACGAGAACTTCGGCAGATTCTCTTGCACTGATTGCGATCGCCACTACGTTAGTAATAAAGGTTTATGGTTGCATAATCGCAGACACCATCCGGAGAGAATACCACCACCGCAGACATTCGAATGTCAATATTGCGATCGGGTTCTGCAAACGAACGCCGCTTACCAGATGCATAAACAAATGCACGAAAGAATGCAGGAGAGAATGCAGCGACAAAGCAGTTTATCGGCGCATATTAAGAAAGCCGAGGACGAGGAGGAATCCTATTTCACTTGCAAGCATTGCTTTAAAGTATTTTCGAATAAGTACAACTTAAAAGCCCATCTTAAAACGCACGGGATCTACGTATCTCCCGGAAGGACGTATTCAAAATCTGGGAAATTCGTTAAGACGTTCTGGTGCGATGTTTGCCATCAGGCGTGCCAGGGCTACGCGGAATTGCAGAAACATAAACAAGAACACATTAAAGAGAAGCTTAAGGAAACGCAAAATAGGCAGGTGTCCCACCACCAGCTTCCGTTGCATCATTCTAGCGTTGAGGTTATAATCGAggaggacgttaagcctcaaaTTTTCAATTGCGATATCTGCACTAAAGGATTCCTTTCGAAAGGGCAACTGATGGCGCATAAGACGACCCACGATCAGGAGAATCGTGGCAGTCAAAAGAGGAATTTCGTTTATTGTAAATACTGCAAGATTCCCTTCTTGAATGTTGACAGTTTGAATCGGCATATGGAGGAGGAACATAACGAGTTAAAAGTGCAGAAACCGAAGAGTATCACCAAGAAGCACGCTTGCAATATGTGTAAAAAAGTTTTCGACACCGCCGGGGCTCTATGTTCGCATCAAGGCTGGCATAAGCGAGGCAAATCAGAAAAGAGCTTGAAATCAGATCGGATACCGCAGCAACAGCAACACCATCATCAACAGCAGCAGCAACACCACCACCAAATGAATATCAAACACGAATGCACTTCTTGCAATTTAACGTTCTTAACGGACACAGCCCTACAAATCCACATATTAGAAGCGCATCGAAACGTCAATACGCACGTGCTGCCATCTAGATGCACCACCTGTAATATCGAGTTTAAAACGCAAGCTTCCTACGACGAACACGCGCGTTTGCACAGGACGACATCTACGGCGTTCCAGTGCAAGTACTGCTCGAAGAGATTCACCAAGAGCGAGACGTATAACATTCACGTGAACGAGCAGCATCCACAACACGCCGACGCTAAATTTAAATGTCACCAATGCGAGCGTATTTTCGAGAAGCAGAACGCTCTGACGATTCATCTCAAGGTTCACGATAGGCAGCGGTTAACCGGGGCCCCGATTAAACAGCCCAAATCGCATATTTATACCTGTTCGATATGCCATTTAGGTTTCGAAATACCCAAAGATTTAAGGAATCATATTATTACGTCACATCCATTTTAA
Protein Sequence: MGEERFGNYSSCCRLCLSDKMNYLKPIFEDEEESTRLVHRIQIFLGVEISENDKISTMICNQCRSKLNNWECYKSECTKNQTKLQQWLGSWNASVSDNNIGNMTIQVKDEPVDCDDNSDIPHLEDTTEDQVINIKAEPADGVIDDYYEQPPQLTPHTDSRSQDFDQSNALMELENGHEISYEGGRTANSKQCTICNKLFSTAGNRMKHERLIHGNGVRKALWGSNGATNHQDDSTQQSMDSYASSTIHTDASNVDGDHDHPNSNLQKIQFAAGLRLKQKSHGSSTPSASDGCLTQIEFAYIERSKALLAMLHKFRCACHNVSFPTVKRLFAHLRMSYTWFPIFTCYNCVITFSTRSLNMRHTGRCPKPYLENSMRLAEMRKRSENKIRLYQYSKCIKCENLYAFHEDYCDHIDKDHSQEAPFVCICNRKFNGVEEFRQHAYNSCYLMYYCDVCYSVFETLDDFRVHCEEDHDKIEDYSFVTPNPTFAYVDREEISASRKRTHEEMQNDSVASVEVNGEIEEIKQEDGNDRKKFIPSKPYNEPTSCDLCDRRFSNYYSLRKHMKIHKRSSIASSWKSKPSSCDKCGKVFSTYYNMIRHYKVHDDAEKHLQCALCDEKFRLVSELKDHLILVHGRANVCQECGRQFESVKELEQHRSVHLNIKVYRDSKTQSYRTGTKPRYTCDLCENVFDTESELSDHIETMHNGMSPATETKPPRETLHENFGRFSCTDCDRHYVSNKGLWLHNRRHHPERIPPPQTFECQYCDRVLQTNAAYQMHKQMHERMQERMQRQSSLSAHIKKAEDEEESYFTCKHCFKVFSNKYNLKAHLKTHGIYVSPGRTYSKSGKFVKTFWCDVCHQACQGYAELQKHKQEHIKEKLKETQNRQVSHHQLPLHHSSVEVIIEEDVKPQIFNCDICTKGFLSKGQLMAHKTTHDQENRGSQKRNFVYCKYCKIPFLNVDSLNRHMEEEHNELKVQKPKSITKKHACNMCKKVFDTAGALCSHQGWHKRGKSEKSLKSDRIPQQQQHHHQQQQQHHHQMNIKHECTSCNLTFLTDTALQIHILEAHRNVNTHVLPSRCTTCNIEFKTQASYDEHARLHRTTSTAFQCKYCSKRFTKSETYNIHVNEQHPQHADAKFKCHQCERIFEKQNALTIHLKVHDRQRLTGAPIKQPKSHIYTCSICHLGFEIPKDLRNHIITSHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01121030; iTF_00956482; iTF_00627526; iTF_01499065;
90% Identity: -
80% Identity: -