Tdic016426.1
Basic Information
- Insect
- Trypoxylus dichotomus
- Gene Symbol
- -
- Assembly
- GCA_014905495.1
- Location
- BNES01000076.1:2143657-2156679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.002 0.18 12.8 1.0 2 23 190 212 189 212 0.96 2 20 0.035 3.2 8.9 0.5 1 20 342 361 342 363 0.95 3 20 0.71 63 4.8 1.3 1 19 447 465 447 470 0.95 4 20 4.6e-06 0.00041 21.1 2.2 2 23 543 564 542 564 0.96 5 20 1.6e-06 0.00015 22.5 1.0 2 23 579 600 578 600 0.97 6 20 0.033 3 8.9 0.1 2 23 608 630 607 630 0.93 7 20 0.00088 0.078 13.9 0.2 2 23 635 656 635 656 0.96 8 20 0.0027 0.24 12.4 0.0 1 23 678 701 678 701 0.98 9 20 0.029 2.6 9.2 4.0 1 23 725 747 725 748 0.95 10 20 0.0037 0.33 12.0 0.6 1 23 758 780 758 780 0.98 11 20 1.6e-06 0.00014 22.5 7.0 1 23 808 830 808 830 0.99 12 20 5.7 5.1e+02 1.9 3.8 3 23 852 872 850 872 0.95 13 20 0.0037 0.33 12.0 1.1 1 23 913 935 913 935 0.97 14 20 0.038 3.4 8.8 0.2 2 23 949 971 948 971 0.92 15 20 0.00037 0.033 15.1 0.9 1 23 986 1008 986 1008 0.93 16 20 0.0066 0.59 11.2 0.2 1 23 1030 1053 1030 1053 0.94 17 20 0.0027 0.24 12.4 0.3 2 23 1064 1085 1063 1085 0.96 18 20 0.00018 0.016 16.1 2.0 1 23 1092 1115 1092 1115 0.95 19 20 9.1e-06 0.00081 20.2 1.9 1 23 1123 1145 1123 1145 0.99 20 20 0.0003 0.027 15.4 0.4 1 23 1163 1186 1163 1186 0.98
Sequence Information
- Coding Sequence
- ATGGGCGAGGAAAGATTTGGAAATTACAGCTCCTGTTGTCGACTCTGCCTATCCGATAAGTTCAACTATTTGAAGCCGATATTTGAAGACGAAGCGGAAGGTACGACATTGGCGCAGAGGATCTTGAATTTCATCGGTGTAGAGATATTACAAAATGACAAAATCTCCACAATGATTTGTAACCAATGCCGGGCAAGGGTGAATAATTGGGAGTCTTACAAGTCCGATTGCATGAAGAATCAGACCAAATTACACGAATGGCTCAGCAGCTGGAGTACTACAACCGGAGATAATAACATAAGCAATATGACAATTCAAGTCAAAGATGAACCAGTAGACTGTGATGAGAGTGCAGATATTCCACAGCTGGAAGATGCTTCGGAAGATCAGGTCACCACTATCAAACCTGAACCTTCGGATGATGTGGTTGAGGAATATTATGAGCAACCTCCGCAGCTGACCCCGCATAACCAAGATTCACGCTCACAAGATTTTGAGGACCAGCCAATGATGATGgTGAATGGTCATGGAGAAGGCTTTGTCGGGAGCAAGAGCACAAACAGTAAGCAATGCACAATTTGTTATAAGCTTTTTAGCACTTCTGGTAACCGCATGAAGCATGAGCGTATTATTCATGGTACTGGGTCAGGAAAATTACCAGTGATCACCAATAATGCTTCGGCGAGCCAAGACGACAATTCGCAACAATCAATAGAATCCTTCGTAAGCAGCACGTTGAATACCGACGACTCCATCATAGATTCCGAAAACGAGAGTCGAAATTCCAACCTGCAAAAGATCCAATTCGCCGCAGGTTTACGTCTCAAACAGAAATCCCAAGGATCTTCAACGCCTTCGACGATAGAAGGCCCTCTAACACCGATTGAGTTAGCCTACATCGAACGCAGCAAAGCCTTACTGTCGATGCTGCACAAGTTCCGTTGCGCATGTCATAACGTATCTTTTCCGACAGTTAAACGCTTGTTCGCGCATCTCCGCATGAGCTACACGTGGTTTCCTATATTCACCTGTTACAATTGCGTCATAACGTTCTCCACGCGTTCGTTAAACATGAGACATACTGGGAGGTGTCCGAGACCCTACCTGGAGAACAGTATGAGGCTAGCGGAGATGAGAAGACGTTCCGAAACGAAGATACGATTGTATCAATACACCAAATGCGTCAGATGCGAGAACTTGTACTCGTTCTACGAAGATTATTGCGAGCATATCGATAAAGATCACTCGCAAGACCCGCCGTTCACGTGTTTATGCATGAGGAAATTCGATATTGTAGACGAATTTAGGCAGCACGCTTACAATTCTTGTTACTTGACTTATTACTGCGATGTTTGCTATTCGGTGTTTGAATCTTTGGATGATTTTCGTATTCACTGTGAGGATGAACACGATAAGATCGAGGAGTACAGTTTTGTCACTCCGAATCCTACGTTTACTCTTGTCGATCGCGAGGAGATAGCTGCGTCCCGGAAGAGGACGCATGATGAGATGCAAAATGATAGTGCGACTGTTACTGAAGCTAACGGAGATCTGGCTGAAATTAAGCAAGAGGACGGTAACGATAGGAAGAAGTTCATCCCGAGTAAGCCTTATAACGAGCCGACAAGTTGCGATATGTGTGATCGTAGGTTCTCGAACTATTACAGCTTAAGAAAACACATGAAATTGCATAGaagAAGCAGTATTGCCAACGGCTGGAAAAGTAAACCTTCCACGTGCGACAAATGTGGAAAAGTCTTTTCCACTTACTACAATATGATTAGACATTATAAGGTACACGATGACACAGAAAAGCATCTCCAATGCGCCTTATGCTCTGAGAAATTTAGACTGGTCTCCGAACTGAAGGACCATTTGATACTCGTACATGGCAGAGCTAACGTTTGCCAAGAGTGCGGAAGACAGTTCGAGTCCGTAAAGGAATTGGAGCAACATAGAAGTGTCCATTTGAATATCAAGGTCTATAGGGACTCGAAAACCCAATCGTATAGAACCGGAACTAAACCACGTTACACGTGCGACTTGTGCGAGAATGTTTTCGATACAGACGCAGAATTGAACGATCACATTGAAACAATGCACAATGGAATGTCCAGCGATGATAAGAAGGCGGCCGTGGAGGATAATCCGTCTCAAGAAGATTTCGGAAGATTTTCGTGCATGGATTGTGACCGCCATTACGTGAGTTATAAAGGATTATGGTTACATAATCGAAGGCATCATCCGGAACGCAAACCTACACCGCAGACTTTCGAATGTCAGTATTGCGATAGAGTACTTCAAACAAATGCCGCGTATCAGATGCACAAACAGATGCATGAGAGAATGCAAGAAAGGATGCAGAGACAATCCAGCTTATCGTCGCATATCAAGAAGAACGAAGACGAGGAAGAATCGTATTTCACCTGCAAACACTGCTTTAAAGTATTCTCAAACAAATACAACTTAAAAACTCACTTGAAGACTCACGGTATTTACGTATCACCTGGTAGGACCTACTCGAAATCAGGAAAGTTCGTAAAGACCTTCTGGTGTGATGTCTGCCACCAAGCTTGCCAAGGCTACGCCGAATTGCAAAAACACAAACATGAACATATCAAGGAGAAGCTAAAGGACTCTCATAGCAGACAGCAGGCTTCGCATCACCAATCAGCGCAGTCGCATCAGCTTCAGATCATCGACGTAGAAGGCGACGAAGACATCAAGCCACAGATCTTTAACTGCGATATCTGTACGAAAGGATTCTTAACGAAGACGCAATTGATGTCGCATAAGGCGACGCACGATCAGGAGAGTCGCGGTAATCAAAAGAGAAATTTCGTGTACTGTAAATACTGCAAGATACCATTCCTTAACGTCGAAAGTCTAAATAAGCACATGGAAGACGAACACAACGAGTTGAAGGCGCAGAAACCGAAGAGCATCACCAAAAAGCATGCCTGCAATATTTGCAAGAAAGCGTTCGATACCGCGGGCGCGCTGTGTTCGCATCAGGGCTGGCATAAACGAGGCAAATCGGATAAGATGTTGAAAGCGGAACGGGCCGCGCAACCAATTAACGTCAAGCACGAATGCGCCTCGTGCAACTTGACGTTCTCGACGGACACCGCCTTACAAATACACATTCTCGAAGCGCATCGGAACGTGAATACGCATCTACTGCCATCTAGGTGCACCATTTGTAACATCGAATTTAAGACGCAAGCATCCTACGACGAACACGCCAGATTGCATAGGACCGCCTCCACCGCCTTCCAATGCAAGTACTGCTCGAAGAGATTCAACAAGAGCGAAACCTTCAACATTCACGTTAACGAGGTGCATCCGGAATTCGCGGACTGTAAATTCAAATGTCACCAATGCGATCGCGTCTTCGAGAAGCAGAACGCGTTAACGATCCATCTGAAGGTGCACGATCGGCAGAGATTGACTGGCGCGCCGATCAAGCAACCTAAATCTCACGTGTATACCTGTTCCATATGCCATTTGGGTTTCGAGATTCCGAAAGACTTGCGTAATCATATAATTACATCCCATCCATTTTAA
- Protein Sequence
- MGEERFGNYSSCCRLCLSDKFNYLKPIFEDEAEGTTLAQRILNFIGVEILQNDKISTMICNQCRARVNNWESYKSDCMKNQTKLHEWLSSWSTTTGDNNISNMTIQVKDEPVDCDESADIPQLEDASEDQVTTIKPEPSDDVVEEYYEQPPQLTPHNQDSRSQDFEDQPMMMVNGHGEGFVGSKSTNSKQCTICYKLFSTSGNRMKHERIIHGTGSGKLPVITNNASASQDDNSQQSIESFVSSTLNTDDSIIDSENESRNSNLQKIQFAAGLRLKQKSQGSSTPSTIEGPLTPIELAYIERSKALLSMLHKFRCACHNVSFPTVKRLFAHLRMSYTWFPIFTCYNCVITFSTRSLNMRHTGRCPRPYLENSMRLAEMRRRSETKIRLYQYTKCVRCENLYSFYEDYCEHIDKDHSQDPPFTCLCMRKFDIVDEFRQHAYNSCYLTYYCDVCYSVFESLDDFRIHCEDEHDKIEEYSFVTPNPTFTLVDREEIAASRKRTHDEMQNDSATVTEANGDLAEIKQEDGNDRKKFIPSKPYNEPTSCDMCDRRFSNYYSLRKHMKLHRRSSIANGWKSKPSTCDKCGKVFSTYYNMIRHYKVHDDTEKHLQCALCSEKFRLVSELKDHLILVHGRANVCQECGRQFESVKELEQHRSVHLNIKVYRDSKTQSYRTGTKPRYTCDLCENVFDTDAELNDHIETMHNGMSSDDKKAAVEDNPSQEDFGRFSCMDCDRHYVSYKGLWLHNRRHHPERKPTPQTFECQYCDRVLQTNAAYQMHKQMHERMQERMQRQSSLSSHIKKNEDEEESYFTCKHCFKVFSNKYNLKTHLKTHGIYVSPGRTYSKSGKFVKTFWCDVCHQACQGYAELQKHKHEHIKEKLKDSHSRQQASHHQSAQSHQLQIIDVEGDEDIKPQIFNCDICTKGFLTKTQLMSHKATHDQESRGNQKRNFVYCKYCKIPFLNVESLNKHMEDEHNELKAQKPKSITKKHACNICKKAFDTAGALCSHQGWHKRGKSDKMLKAERAAQPINVKHECASCNLTFSTDTALQIHILEAHRNVNTHLLPSRCTICNIEFKTQASYDEHARLHRTASTAFQCKYCSKRFNKSETFNIHVNEVHPEFADCKFKCHQCDRVFEKQNALTIHLKVHDRQRLTGAPIKQPKSHVYTCSICHLGFEIPKDLRNHIITSHPF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252999;
- 90% Identity
- -
- 80% Identity
- -