Pjap001935.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01071706.1:599-8194[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-10 6.1e-08 33.0 0.0 1 39 282 321 282 325 0.90 2 4 4.3e-12 7.3e-10 39.2 0.2 1 39 336 374 336 377 0.95 3 4 3.2e-18 5.4e-16 58.8 0.0 1 45 391 436 391 436 0.98 4 4 1.2 2e+02 2.6 0.1 1 12 443 454 443 454 0.93
Sequence Information
- Coding Sequence
- ATGTCACTCCTAAAAACGGCagatcaattaaaaataaagggCCTATGTGAGTCACCAGAAGAGAAAGACAATTCGGACCAATCGCCAGAGTTTGCATTTGGAGGTCGTGGCTATCCAAAACTCCGAAAATTATCCTCACCTAAACAATTCAAACAGACTGAAAACCAtagaaaacacaaatatagaAAACCTGAACGAAAACAATCACCTGATCAAGAAGATAAAGAAAACAAGGACGCTTCATTTATAAATCACTCGTCTGATGAAGAAAATGACATGCCAGTAGCTCTGGACGAAGAAAGTCGAAAACGAAAGCTAAGCGAAACCATAACCAAACCAATTAACATGACTAGTCATGGCCCACTAGCTGAACAGaCTTTCTCATTCTCTCAGTTCGGTGTGGATAATGATGACTTTCCACCAGAACCACCGGCGCCCACAGCTATTCCTGTAGGAAACATAGAAATGCACGAACACTCACCAACCAGAACTTTACTAACAAATTCTTCAATACACAGGACCGACTTATCAGATTCGCATAAATTTACCActgatataaaaaaagaaattattgatataaaatttgaaacattgcGATCATACGATGGAGAACAATCCATTTTGGATATGGAAGCCAGTCGCATGTCTGGAGCGGATCATTCCATGGATAGCCACGACGATAATGATCAGGGTATGCACACGATGATGATCACACCTGATATGATGGGCATTATGCCAGGATCTGGTCCACACACGCTGGATTCCAATTGTGGAGAAATGTCATTAAAAAGTAATGGGCACACAGAACATACTGGTAGACACGGTGGAGGACCCAAAACATGGACTCAAGAAGATATGGAGTTAGCACTAGATGCCTTAAAGAATCACAATATGAGTTTAACAAAGGCTTCCGCGACCTACGGCATACCATCCACTACTCTATGGCAAAGAGCGCATCGCTTAGGTATAGATACACCAAAAAAAGAAGGACCCACTAAGTCATGGACAGAAGAAAGCCTAAATTCTGCATTAGAAGCACTAAGAACAGGAACAATATCCGCTAATAAAGCTAGTAAAGCATACGGCATACCCAGCAGTACCTTATATAAAATAGCCCGACGAGAAGGTATTAGGTTAGCTGCACCATTTAACGCAGCTCCTACGACATGGACACCGGAAGACCTCGAAAAAGCCTTAGAATCAATTAGATCCGGCCAGACATCAGTACAAAAAGCTTCCACAGAATTCGGTATACCTACAGGTACACTTTATGGAAGGTGCAAACGAGAGGGAATTGAGCTTTCTAGATCAAATCCTACACCTTGGTCGGAAGATGCAATGGGTGAAGCCTTAGAAGCAGTAAG
- Protein Sequence
- MSLLKTADQLKIKGLCESPEEKDNSDQSPEFAFGGRGYPKLRKLSSPKQFKQTENHRKHKYRKPERKQSPDQEDKENKDASFINHSSDEENDMPVALDEESRKRKLSETITKPINMTSHGPLAEQTFSFSQFGVDNDDFPPEPPAPTAIPVGNIEMHEHSPTRTLLTNSSIHRTDLSDSHKFTTDIKKEIIDIKFETLRSYDGEQSILDMEASRMSGADHSMDSHDDNDQGMHTMMITPDMMGIMPGSGPHTLDSNCGEMSLKSNGHTEHTGRHGGGPKTWTQEDMELALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- iTF_00433957;
- 80% Identity
- -