Pser010601.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- -
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000044.1:580507-584369[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.2 1.9e+02 2.3 2.8 1 10 249 258 249 258 0.95 2 11 3.7e-07 2.2e-05 24.1 0.5 1 23 293 315 293 315 0.98 3 11 8.1e-09 4.7e-07 29.3 1.7 1 23 321 343 321 343 0.98 4 11 7.5e-07 4.4e-05 23.2 3.9 1 23 349 371 349 371 0.99 5 11 0.0011 0.064 13.2 1.3 1 23 401 424 401 424 0.97 6 11 0.00012 0.0068 16.3 11.5 1 23 437 459 437 459 0.98 7 11 5.5e-05 0.0032 17.3 5.3 2 23 697 719 697 719 0.97 8 11 3.3e-06 0.00019 21.1 6.3 1 23 765 788 765 788 0.98 9 11 0.0061 0.36 10.9 1.7 2 23 805 826 804 826 0.94 10 11 0.061 3.5 7.7 3.0 1 21 849 869 849 870 0.94 11 11 8.2e-07 4.8e-05 23.0 2.3 1 23 873 896 873 896 0.97
Sequence Information
- Coding Sequence
- ATGGACGAGTCGAAACTTATTATCGACGAGGAACTGTGTCGCATTTGCAGAAGTACGGAAGGGGGTCAGCTTGATATTTTTGGGCTCTCTGGGGCGGAACGGAATATTCCCACAAAAATTCTCGATTGCCTGCCCATAAAAGTGTCAGAGAAAGATGGCCTCCCGAAAACAATTTGCACGGAATGCGCCGAGAAACTCGAGGAGTTTTACAATTTCCGGGAACTCGCCAGGAAAATCGACTCCACttttaacgaatttttaaattcagacaACAATAAATCAGATTCGGACTGTTCAAATTCGAAAACGTCTGAAACGTCCAAAGACAAAGTTGACAGTGGCTCGACTCATTTGTCCATTGAGGTAAGAAGTTCCAGTTCACCAAAGAAGCAGCAGGCCAAGTTAGGAGATCCACAACCTGAGGATTATGTTTTAATGAAGGAAGAAACCATAACAGTTGACAACACAACCAAaaattcaaatgtcaTGGCAGATTACCTAATAgaattcaataacaataacaaagtcaaaaatgaaagtgaaattcaagATGTAGATATACTGAATGCAATGAGGAAAAGGCGAGAGGTCCTACCTCCAATGTGGGATGTATTTGAGAGGATAAgccaagaagaaaaagcagTCGATCCGAAATTAGCAAAAGGTAAACAACAAAACACTCGAACTGTCCTCaagggaaaattttcagtcattCACCGAAGGTACATCGTGGCAAAAGGCGCTTTTCCCTGTTCCCTCTGCGGACGGTGTTTCCTTTTCAACCAGGGACGTCCTCGAGAGGGCATTCCTTTTGCGGATGCAGACATTGTTCACGCCGACCAGGAAAGCAATGCTGAGAGTCCTTCAGACGGCTTGTACCCGTGTCCCCAGTGTGGGAAACTCTTTCCAAGGCGAACCAGCCTCAAGCGACACCAACAAATCCATTTCGAAGGAAAGAAATACGTTTGTAAAATATGTGGAAAAGCATTCAACAGAAATGAGCATTTGACGAGGCACATGTTGTCCCACACCGGAGGACGTCCTTTCCAGTGCGATTTATGCTCCAAGGTATTCACGAGGAAGGAACACTTAATCAGGCACAAACAAACTCATGACTTTACGGGAGTAGTTAAAGAAGAGTCAGATGATCCTTCCGGTTATGGGTTTTCCGATTTTACAGAGACGGCAGAGAGCAAACCCTTTGTTTGCGACATTTGTCAGTCGGCCTATGCTCGGCGCGAGCACATGACAAAGCACAAAAAGATGGCTCACGGCATAGACGCCGACCCGGAATCCGAACCAAAACCCTACTGCTGCAACCACTGCTTTAAGACGTTTACAAGAAAAGAGCATTTAACTAGACACAAGAAGATACACATTCGCGAAGCGTTTTCAGGAAACTACGAAATTGCAGACGGAGTTGCTCCCTCGTTATTAATAACCGGTCCGACAGGTAGCAAATTACCAAAAGACAAGCCCAAAAAAGACATCCTAATTCCTATAACCGTTAATTCTAGTATCAGTAAGTTAAATAATGTGACGATAACTCCTCAAGTAAAGACAAACGTCACCAAAAATCCAATTACGAAGCCGCAAGTCAGCGTCGTCAAGCCGATGACCAATGTGACTCCTCTAAGTATGAACAAGGACACGGTGACATTGGAAATATCGGGTGGAAGTGAGGAGGGAGAGTATAAATCTAAGGTCGGTGAAAGTTTAATGAATAGTATATTGAAGAACGGGAAATACGGCGAGATCAGCATAGTTGACgtgaaaacggaaaaaaagcCGGAGGTAtcagtaacaataaataaatcaaaagacTTGTATCCTGACGCGCTGATGGAGTGTAACATAGAAGAAGGAGGGGATTCGGGAACAGAGTATGAAAGCTCGTATTATGATAACAAAATGCTGACGGAAGAGGAGAAAGCTCAGCTGGAAGGATTTCTAGCCGAGACTAGTTTTGGAAGTGGCGACTACCTCGGATACGATTCTGAAGGAgtgggaagaagaaaacggaaCAATTCAGAAGAGTACATTGAAGAAAAAGACAGCATAGACTTGGAGGACCTCAAGAAAATGCCCAAGTGTCGCATATGTTCCAAAGCATTCAGCAAAAAGAATCATTTGAACCGTCACCTGAAGAGATACCACAACCTGACCAAGGAACAAGTCAATTCCGGCAAATATGAAATATACGAAAATGGCGGAGGAGAATTTGACGACGTTGAGGGAGACGAATTCTACGACGAGGACGGCAATCCAATACTGAAACGACCGAAGGGCACGTTTCCCTGCAACATTTGCAAAAAGACGTTCACAAGGAAGTACCACATGTACCGACACCAGAAGACCCAACACGGCATCGACTTTCCCTCGAAGGAGCAACAGAGAGAGGAGCCTTGGCTCAAATGTCCGAATTGCTCTCTAATATTTAACAACACGGAAGATTTCCAGAAACACGAATGCGGTCACGCGgacgacgaggacgaggaagaggagaagaagtCAACGGAGCCGAAACGGAAGCCgaagaattcatttaaatgtgCAATATGTAAGAACACCTTCGAGACCCATGATGGATTCAAGGACCACGTGTGCAAGAAGGGCTACAAATGCGAAACCTGCGGTGAAACGTTCGAGAAGAGCAAACACTTGACGAGACACATGGAAGTTCAGCACGCAGCGGAGGAGCAGGGAGGCAGTTCACCCTAA
- Protein Sequence
- MDESKLIIDEELCRICRSTEGGQLDIFGLSGAERNIPTKILDCLPIKVSEKDGLPKTICTECAEKLEEFYNFRELARKIDSTFNEFLNSDNNKSDSDCSNSKTSETSKDKVDSGSTHLSIEVRSSSSPKKQQAKLGDPQPEDYVLMKEETITVDNTTKNSNVMADYLIEFNNNNKVKNESEIQDVDILNAMRKRREVLPPMWDVFERISQEEKAVDPKLAKGKQQNTRTVLKGKFSVIHRRYIVAKGAFPCSLCGRCFLFNQGRPREGIPFADADIVHADQESNAESPSDGLYPCPQCGKLFPRRTSLKRHQQIHFEGKKYVCKICGKAFNRNEHLTRHMLSHTGGRPFQCDLCSKVFTRKEHLIRHKQTHDFTGVVKEESDDPSGYGFSDFTETAESKPFVCDICQSAYARREHMTKHKKMAHGIDADPESEPKPYCCNHCFKTFTRKEHLTRHKKIHIREAFSGNYEIADGVAPSLLITGPTGSKLPKDKPKKDILIPITVNSSISKLNNVTITPQVKTNVTKNPITKPQVSVVKPMTNVTPLSMNKDTVTLEISGGSEEGEYKSKVGESLMNSILKNGKYGEISIVDVKTEKKPEVSVTINKSKDLYPDALMECNIEEGGDSGTEYESSYYDNKMLTEEEKAQLEGFLAETSFGSGDYLGYDSEGVGRRKRNNSEEYIEEKDSIDLEDLKKMPKCRICSKAFSKKNHLNRHLKRYHNLTKEQVNSGKYEIYENGGGEFDDVEGDEFYDEDGNPILKRPKGTFPCNICKKTFTRKYHMYRHQKTQHGIDFPSKEQQREEPWLKCPNCSLIFNNTEDFQKHECGHADDEDEEEEKKSTEPKRKPKNSFKCAICKNTFETHDGFKDHVCKKGYKCETCGETFEKSKHLTRHMEVQHAAEEQGGSSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165065; iTF_00362730; iTF_01308879; iTF_01308199;
- 90% Identity
- -
- 80% Identity
- -