Rmar004300.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus marginatus
Gene Symbol
-
Assembly
GCA_028565995.1
Location
JAOWBB010000007.1:1429986-1434429[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 3.3 5.6e+02 2.3 2.8 1 10 250 259 250 259 0.95
2 11 4.7e-06 0.00081 20.7 0.9 1 23 294 316 294 316 0.98
3 11 4.3e-07 7.4e-05 23.9 2.0 1 23 322 344 322 344 0.96
4 11 1.1e-06 0.00019 22.6 2.8 1 23 350 372 350 372 0.97
5 11 0.0016 0.27 12.7 2.5 1 23 402 425 402 425 0.97
6 11 0.00012 0.02 16.3 11.5 1 23 438 460 438 460 0.98
7 11 0.00014 0.024 16.1 4.4 2 23 698 720 698 720 0.97
8 11 4.9e-06 0.00083 20.6 6.3 1 23 766 789 766 789 0.98
9 11 0.0041 0.7 11.4 0.2 2 19 806 823 805 823 0.97
10 11 0.062 11 7.7 3.0 1 21 852 872 852 873 0.94
11 11 2.3e-05 0.0039 18.5 2.2 1 23 876 898 876 898 0.98

Sequence Information

Coding Sequence
ATGAATGATTCAAAATTAGTGATTGACGAAGAATTGTGCCGAATTTGCAAAAGTTCGGAAGGGGGTCAGCTTGATATTTTTGGACTCTCTGGGGCGGAACGGAATATTCCCACAAAAATTCGTGAATGCCTTCCGATCAAAGTGTCAGAGAAAGATGGCCTCCCGAAAACAATTTGCACGGAATGCGCTGAGAAACtcgaagatttttataattttcgggAATTATCTCGTAAAATTGAGTCCTCActtaatgaaatgtttcaaTCGGATAATAATCGGTCGGATTCGGAttgttcaaattcaaaaacttcCGAAACGTCCAAAGACAAAGttgATAGCAATTCAGCACAATTGTCACTTGATGTACAAAGTTCCAGTTCACCAAAGAAGAGACAAGCAAAGCTAGCAGAACCACAACCAGAAGattatgttttaatgaaagaagaaaCTATAAATGTTGATAATACTACCaaaaactcAAATATTATGGCAGACTACCTTATAGAAttcaataataacaacaaagaGAAGAGTGATAGTGAAATTCAGGACAATGATATTCTTAATGCAATGAGAAAGCGACGAGAAGTACTACCTCCGATGTGGGATGTTTTCGAAAAAGTATGTGCTGATGAAAGGCATGCCGAGGCCGCCAAAAACGGTAAAGGTAAACAACAAAACGTTCGAACTGTGCTAAAAGGCAAGTTTTCGGTTATACATCGAAGGTATATAGTTGCTAAAGGAGCTTTTCCATGCTCGCTCTGCGGTCGATGTTTTCTCTTTAACCAAGGTCGTCCTCGCGAGGGCATTCCTTATGCTGATGCAGACATTGCACCAGGCGATCAAGACAGTAATATCGACAGTCCGTCCGATGGTCTGTACCCGTGTAAGCAGTGCGGTAAACTCTTCCCCAGGCGAACGAGTTTAAAGCGTCACGAGCAAATCCACTTTGAGgggaagaaatatttatgtaaaacttGCGGGAAAGCATTTAATCGTAACGAGCATTTAGTAAGGCACATGCTGTCTCACACGGGAGGTCGCCCGTTCCAGTGTGACTTATGTTCCAAAGTGTTCACTAGGAAGGAGCATTTGATCCGTCACAGACAGGGTCATGATATTTCAGGAGTGGTAAAGGAAGAACCTGAGGAGATAACTACCGGTTACGGCTTTTCTGACTATGAACCGACTGATACCAAACCATTTGTTTGCGATATTTGTCATTCCGCATATGCTAGACGCGAACATATGACAAAGCATAAGAAAGTTGCTCATGGGATCGATGCGGATCCGGAATCCGAACCAAAGCCGTATTGTTGCAATCATTGCTTCAAAACATTTACGCGAAAAGAGCACTTGACtcgtcataaaaaaattcacatacgTGAGGCTTTTTCCGGCAACTATGAAATTGCGGATGGGGTATCTCCCGAGGTGTTGATTGCTGGACCACCcggcattaaattttcgagagacaaaatgaaaaaggatattttgaTACCTCTTACggtaaattcaaatatcagCAAGTTAAATAATGTTACAATAACTCCACAAAATAAGGCGAGTAGTCCGAAAATAACGAGCGGGAAGTCTCCCCAGATCAGCATAAAACCGGTGACAAATGTGACGCCTTTGAGTATGAACAAAGATACGGTTACTTTAGAAATATCTGGTGGAAGTGAAGATAGAGAATTCAAGTCTAAAAtcggtgaaaatttaatgagtagtatattaaaaaatggtaaatatgGCGAAATAAGCATCGTCGATTTGAAGAACGATAAAAAACAGGAAGTGTCGATCTCCCTGAGAGATGCGGATTATCCCGATTCATTTATGGAGTGCAACATTGAAGAAGGCGGTGGTTCGGGAAATGAGTATGACGGAGGATATTAcgacgataaaaatttaacggaagaagaaaaagctcAGTTGGAAGGATTTTTAGCGGAAACCAGCTTTGGTGGAGGAGAATTCCTTCCCACTGCTTACGACTCCGACAACGCTGCCAAACGGAAACGTGATCATTCCGACGATTACATTGAGGAGAAGGACAGCATAGACCTCGAAGATCTGAAGAAAATGCCCAAGTGCAGAATCTGTGCGAAGgcttttagcaaaaaaaatcatctaaaTCGACATCTGAAGAGGTATCACAATCTATCGAAGGAGCAGGTCAATTCAGGTAAGTACGAGATATATGAGAACGGTAGCGGGGAAGTTGAGGAAATGGAGGGAGACGACTTGTTCGACGACGACGGGAATCCCATTTTAAAACGACCGAAAGGAACATTCCCATGCAGCATTTGCAAGAAAACCTTCACACGGAAGTATCACATGTACAGGCACCAAAAAACGCAACACGGTATTGATTTCCCGACGAAGGAGCAACAGCGGGAGGAGCCTTCGATCAAATGTCCCAATTGCCCTCTCATATTCAATTCGAACGAGGATTTTCAGAAGCACGACTGCGGCGGTAACGACGAAGAAGAGGATGAagaggagaaggagaaaaaagcgAACGAGCCGAGGCGCAAGCCGAAGAATTCGTTTAAATGTGCAATATGTAAGAATACATTCGAAACCCATGACGGGTTTAAGGACCATGTGTGTAAAAAAGGCTACAAATGTGATACATGCGGGGAGACATTTGAGAAAACCAAACATTTGGCTAAGCATTTAGAATCACATGTAGAAAATATGACGGAAATGTTATCAACTTAG
Protein Sequence
MNDSKLVIDEELCRICKSSEGGQLDIFGLSGAERNIPTKIRECLPIKVSEKDGLPKTICTECAEKLEDFYNFRELSRKIESSLNEMFQSDNNRSDSDCSNSKTSETSKDKVDSNSAQLSLDVQSSSSPKKRQAKLAEPQPEDYVLMKEETINVDNTTKNSNIMADYLIEFNNNNKEKSDSEIQDNDILNAMRKRREVLPPMWDVFEKVCADERHAEAAKNGKGKQQNVRTVLKGKFSVIHRRYIVAKGAFPCSLCGRCFLFNQGRPREGIPYADADIAPGDQDSNIDSPSDGLYPCKQCGKLFPRRTSLKRHEQIHFEGKKYLCKTCGKAFNRNEHLVRHMLSHTGGRPFQCDLCSKVFTRKEHLIRHRQGHDISGVVKEEPEEITTGYGFSDYEPTDTKPFVCDICHSAYARREHMTKHKKVAHGIDADPESEPKPYCCNHCFKTFTRKEHLTRHKKIHIREAFSGNYEIADGVSPEVLIAGPPGIKFSRDKMKKDILIPLTVNSNISKLNNVTITPQNKASSPKITSGKSPQISIKPVTNVTPLSMNKDTVTLEISGGSEDREFKSKIGENLMSSILKNGKYGEISIVDLKNDKKQEVSISLRDADYPDSFMECNIEEGGGSGNEYDGGYYDDKNLTEEEKAQLEGFLAETSFGGGEFLPTAYDSDNAAKRKRDHSDDYIEEKDSIDLEDLKKMPKCRICAKAFSKKNHLNRHLKRYHNLSKEQVNSGKYEIYENGSGEVEEMEGDDLFDDDGNPILKRPKGTFPCSICKKTFTRKYHMYRHQKTQHGIDFPTKEQQREEPSIKCPNCPLIFNSNEDFQKHDCGGNDEEEDEEEKEKKANEPRRKPKNSFKCAICKNTFETHDGFKDHVCKKGYKCDTCGETFEKTKHLAKHLESHVENMTEMLST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01251254;
90% Identity
iTF_01308199;
80% Identity
iTF_01308199;