Basic Information

Insect: Polypedilum vanderplanki
Gene Symbol: MBD-R2
Assembly: GCA_018290095.1
Location: CM031380.1:19733975-19741665[+]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5e-15 2.2e-11 43.2 0.1 9 74 464 525 461 528 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5e-15	2.2e-11	43.2	0.1	9	74	464	525	461	528	0.94

Sequence Information

Coding Sequence: atgacaTCTCGAAAGTGTATTATTAAAGATTGTGATTCTGAAGACGGCCATGAAGGCATCACATTTCACCGTTTTCCAACTCCTAAAGGCTCTAATGCAGAACATATTATTTCATGGAGAAAAGCCTGCAAAATTGAGAGCGGTTTTAAACCAAACAAGCATCATTATGTATGTTCTCAACATTTTAGACGTGAAAACTTTTCGATTCTGAGTTCaggcaaaataattttgaagccTCTAACAGTACCATCAATTTTTCCATGGAATAAAGACaatgtaaaaattacaaaatcaaCTATTACTATATCTGATCCTGAATCgccatcaaaaaagaaaaaagatgataaaacaaaagaaaaagacgaAGAGAAACCAATGACAGAAACTGAAAGTtccaatgaagaaaaaaaagatccagaagaaattgatattgCATCAACTCCAATCAAAAATGACGAAACAATCAAAACCGAgagtcaaaaaaagaaaaatagcaataatgcaacaaagaagaaaattagttcagatgaaaagaaaacagCAGTAGTTGAATCTGAATTATCACCTACtaaaccaaaaaaatcatcaaaacaaCTTTCCGCAAGATATCAAGCATTAACAGAAactaaaaaacttaaattagaACAAATTGATCCTCCTtccaatgaaaagaaagaaacaaaaccagtaaaaacttcaaaaattaaagaagaaccAAAATCTGACATTCCTTCTTCATCACAAACAGTTTCATCAtctacttcttcttcttcaatcaaatcaaatgcaatCAACTTTGTTCCTGGGAATTCTATTGAAGTTAAGAATTTTGACGGTAAATGGGTGTcggtaaaaataattgaagttGATATGGACGAACGAGAAGTGTTTGTAAAATCGAGTGAAAAGAACAAATCAAAACCAggtttaaatgATGAATGGATTTCGATGGATAGTCCAAGATTGAGACCAGCACAGCCTGCAGTAACTTTTGAAATTggtgaaaaagttttagcaAGATGGAATGATTGCAGAAAGTTTTCAGCTACAATTCAGAGAGTGCTTGAAAATGATACATATGACGTTCTTTTTGACGATGGATATCCGAAAATTGTACGTGGAGtacatattcaaaaatttaatgcaaaaacagcagcaaaaaCTCAAGTTACTGAAGCTCCACCACCTGCTTTACCAATAAATCCTCTTTTACTTAATCCACCGAGTTTGCTGCCTGATtacataaaagaaatgaaggaTGAATTACCTAGTCCATTAACAGGTGAAAATGGTGAATGGTGTTGCGTTTGGGTGGACGATATTCCTGTAGGTGAAGAATCAAGTTTTGATGGTACTTTTGGAAAATGTCCATCAATAATTATTCCTGATACTCGTCTAAAAGAGGGATGGCAGAAACATATTTACCTACGTCAAAATGGTAAATGGGATGTACTTTTCATCAGTCCCACAAATCGTAAATTAAGATTCaagaatgaattgaaaatatatcTGATTGAAATTGGTGAAATTTATGATCCAAATGTATGGGATTTTAGTTTACATAAAAAACTATCAAAGGCAAAAAATATGTGCATTCAATCtgataaaatgaagaaacatCAAGTAATGTCAACATCGTTTGATGGCAAGGAATCGGTCGATTCTCCAGTTTTCAATCCTTTTGCTAATCTTGGTGCTTTGCCATATGTTCAACCAAATCTCGTTCAAGCACTACCAACTCAAAATGAAGTATCAGTTGGATCTCTCAAAGTAAAAGTAATTGACAATAATTATCATTGTCCTGATGAAAAATGCGACAAAACGTTCCGCAAAGAAAACCATTTGCAAATTCACATCAAGCATTACCATCCAGAATTAGCGAAACTTATGGGCGAATGCCCAAATATGGAAGATTTAGCTTATCTAAGAACGACTGTTGATGACACAGAAATCGCAATGGTGAAATCTAATAGAAAAAGTCATGGACCTAAAGAAGGAAAATCCAAGCCTAAAGCTGATACACAAAACAGCATTCgagatttttcaattcaaatcgAAAAATTGGATCCTGATTATAAGTTCAATATTCAAAAATCACCAATTTTAGAAGAAGCATTGAAAGCACCTTTAATTACTACAAATATTCATACACCATCAAAAGatgcagaaataaaaaaagaaaaagagtttgCAAGTTCACCAATTCAACAATTTGATCCTGAAACGCTAATTCCTCCGCACGCAGTTTTAGTAAGTCGATCAAACATGAAGGCTCACAAACGAAAAATGAGAATTCGTTTTAATCCTAAATCAAAGAAATCGAATTCGAAAAAACGATATGGATATTATCCAAATAAATCAGATGCTACAGGCTCAACAGTTGAAGGTGTTATTCCGTATCATGAAGGACCctatttcaaaaatcaacatCCATCAAGTTATGTAGATGAGAATGGAgaagttattaaaattgttcgaatgaaaaaagaagaaattattaattgcATTTGTGGTTTTGGTGAAGAAGATGGTCTAATGATTCAATGCGATTTATGTTTATGCTGGCAACATGGAATTTGtcataatattgaaaaatctcATCAAGTTCCAGAGAAGCATGTTTgttatatttgtaaaaatccaTATAGACAACGTTTATCTACGAGATTCATGCATGATCAAGATTGGCTTTATGACGGCAAACTACCAATAGCAAATTATCATGTTGAAAATCCAAAACAAGCAGCCCGTTTTGATACACTGAAAGAATGTCACACTCTTATCggtaatttaattgaaatgaaaaagtttatgcaCAGTTTAGATGTGAAAATCAACATTGCCGAAAATAGTGAACAtccaaaattatatttatggGCAAAGAAATGGGAAGAAAGTCCTCCTCGTGAGAAGAGCTCAGATTCTGATTGTAAAGATAACATTAAATTAGAAGAAGATGTAAAAATGCCTCTTGCTCCTGAACCTGAAGCAGCCATTGAACCAAAAAAGTGTCAGCAAACGCTCCTTGATCATATTGAATTTCAACAAAACAATGTTAAATCGCGATTAGATATGATCGAAAATGAGATAACTGcacttGAAGAAGAAGTTGCTACAAAAATTCCTAATGGTAAAAAACCAATAGACGATGCAACATTAAAGTCAACAATTTATATGCTTATCAAAGATTTAAAGCAGATCAACAATTTTGCAGACATTCATCGCAATCCATTACCGGAAGAGGAATtgtaa
Protein Sequence: MTSRKCIIKDCDSEDGHEGITFHRFPTPKGSNAEHIISWRKACKIESGFKPNKHHYVCSQHFRRENFSILSSGKIILKPLTVPSIFPWNKDNVKITKSTITISDPESPSKKKKDDKTKEKDEEKPMTETESSNEEKKDPEEIDIASTPIKNDETIKTESQKKKNSNNATKKKISSDEKKTAVVESELSPTKPKKSSKQLSARYQALTETKKLKLEQIDPPSNEKKETKPVKTSKIKEEPKSDIPSSSQTVSSSTSSSSIKSNAINFVPGNSIEVKNFDGKWVSVKIIEVDMDEREVFVKSSEKNKSKPGLNDEWISMDSPRLRPAQPAVTFEIGEKVLARWNDCRKFSATIQRVLENDTYDVLFDDGYPKIVRGVHIQKFNAKTAAKTQVTEAPPPALPINPLLLNPPSLLPDYIKEMKDELPSPLTGENGEWCCVWVDDIPVGEESSFDGTFGKCPSIIIPDTRLKEGWQKHIYLRQNGKWDVLFISPTNRKLRFKNELKIYLIEIGEIYDPNVWDFSLHKKLSKAKNMCIQSDKMKKHQVMSTSFDGKESVDSPVFNPFANLGALPYVQPNLVQALPTQNEVSVGSLKVKVIDNNYHCPDEKCDKTFRKENHLQIHIKHYHPELAKLMGECPNMEDLAYLRTTVDDTEIAMVKSNRKSHGPKEGKSKPKADTQNSIRDFSIQIEKLDPDYKFNIQKSPILEEALKAPLITTNIHTPSKDAEIKKEKEFASSPIQQFDPETLIPPHAVLVSRSNMKAHKRKMRIRFNPKSKKSNSKKRYGYYPNKSDATGSTVEGVIPYHEGPYFKNQHPSSYVDENGEVIKIVRMKKEEIINCICGFGEEDGLMIQCDLCLCWQHGICHNIEKSHQVPEKHVCYICKNPYRQRLSTRFMHDQDWLYDGKLPIANYHVENPKQAARFDTLKECHTLIGNLIEMKKFMHSLDVKINIAENSEHPKLYLWAKKWEESPPREKSSDSDCKDNIKLEEDVKMPLAPEPEAAIEPKKCQQTLLDHIEFQQNNVKSRLDMIENEITALEEEVATKIPNGKKPIDDATLKSTIYMLIKDLKQINNFADIHRNPLPEEEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01249106;
90% Identity: iTF_01250137;
80% Identity: iTF_01250137;