Ppem014598.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- MBD-R2
- Assembly
- GCA_014622435.1
- Location
- JACWBX010001155.1:10183-13584[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-16 4.5e-13 48.6 0.0 8 74 458 520 454 523 0.94 2 2 1.7 7.2e+03 -3.4 0.0 48 75 986 1012 984 1014 0.80
Sequence Information
- Coding Sequence
- ATGACATCTAGAAAGTGTATCATTAAAGATTGTGAATCAGAAGACGGTCATGAAGGCATTACATTTCATCGTTTTCCAGGTCCAAAAGGATCTAATGCTGAACACATAAATTTATGGAGAAAAGCTTGCAAAATTGAGAGCGGTTTTAAACCAAACAAGCATCATTTTGTTTGTTCGCAACATTTTCGACGTGAAAACTTTTCAATTCTGAATTCAGGAAAAATAATTTTAAAGCCTCTTACAGTTCCATCGATTTTTCCGTGGAATAAAGATAATATTAAAGTCACAAAATCCACCATCACTATTTCTGACACGGAATCGCCATCAAAGAAGAAAAAAGATGATAAATCGAAAGAAAAGGACACAGAAAAATCAACACCAGAAACAGAAAACAGCAATGCAATTACAGAAAAGAAAGATCCGGAAGGTGATGTTGTTGCATCAACACCAGTTAAAAATGAAGACATAAGTAAAATTGAAAGTCAAAAAAAGAAAAATAGTAATAGTACATTGAAAAAGAAAAACAATTTGGATATAAAAGAAGCATCAACAGCAAAACCAAAAAAATCTTCAAAACGACTTTCTGCAAAATATGAACAAGCATTGATAGAAGCTAAAAAGATTAAATTGGAACAAATTGATACTTCTACCAGTGAAAAAAAAGAATCAAAAATCGTAAAAACTTCAAAAGCGAAGGATGAAATAAAATCCGATACTCCTTCATCACAAACAGTCTCTTCTTCCACTTCTTCATCTTCAATAAAATCAAATGCAATCAGTTTTGTTCCAGGGAACTCTATTGAAGTCAAGAATTTTGATGGAAAATGGGTATCTGTAAAAATTATTGAAGTTGATATGGACGAACGAGAAGTGTTTGTTAAATCGAGTGAAAAGAATAAATCAAAACCAGGATTAAATGATGAATGGATTTCGATGGATAGTCCAAGATTGAGACCAGCACAACCAGCAGTTACTTTCGAGGTTGGCGAAAAAGTTCTAGCAAGATGGAATGATTGCAGAAAATTCTCAGCAACAATTCAGAGAGTGCTTGAGAATGATACATATGACGTTCTTTTTGACGATGGTTATCCAAAAATTGTCCGTGGAGTACACATTCAAAAATTCAATGCGAAAACAGCAGCAAAAACACAAGTAGCAGAAGTTTCTTTGCCACCTACACCAATTAATCCATTGTTACTTAATCCACCGAGCTTGCTTCCTGACTATATAAAAGAAATGAAAGAAGATTTACCAAAACCAATAACAGGTGAAAATGGCGAGTGGTGTTGCGTTTGGGTAGATGATATACCGGTTGGTGAAGAGTCTTCTTTTGATGGCACTTTTGGAAAATGTCCTTCAATCATAATTGCCGATAATCGTCTAAAAGAGGGATGGCAGAAACATATTTATCTGCGTCAAAATGGTAAATGGGATGTACTTTTTATTAGTCCAACAAATCGCAAATTAAGATTCAAGAATGAATTAAAAGTATATCTTGCTGAAACCGGTGAAATTTATGATCCCAATGTATGGGATTTCAGTCTCCATAAAAAACTATCGAAAGCCAAAAATATGTGTATTCAATCTGACAAAATGAAGAAACATCAAGTATTGTCAACATCATTTGATGGCAAGGAATCGGGTGAATCTCCAGTTTTCAATAATCCATTTGCTAATCTCGGTGCATTGCCGTATGTTCAGCCAAATCTCGTTCAAACACCTCCAACACAAAACGAAGTGTCAGTTGGATCACTTAAAGTGAAAGTAATTGATAACAACTATCATTGTCCCGATGAAAAATGTGATAAAACTTTTCGTAAAGAAAATCATTTGCAAATCCACATCAAGCATTATCATGCAGAATTAGCGAAACTTATGGGTGAATGCCCAAACATGGAAGATTTAGCTTATTTGCGAACGACCGTTGATGATACCGAAATAGCAATGGTTAAATCTAATAGAAAGTCTCATGGACCTAAAGAAGGGAAATCTAAATCAAAAATTGACACACAAAATAGCATTCGAGATTTCTCAATTCAAATCGAAAAGTTATCTCCTGATTACAAATTCGATGTTCAAAGATCACCAATTTTAGAGGAAGCATTGAAAGCGCCATTAATCACAACAAATATTCATGCACCAACAAAAGATGATGAGATAAAAAAAGAACTTGTAAATTCACCAATTCAACAATTTGATCCTGAATCATTAATACCTCCGCATGCTGTAAGTCGACCCAATATGAAGTCCCATAAACGTAAAATGAGAATTCGTTTCAATCCAAAGTCAAAAAAATCAAACTTAAAGAAGCGATATGAGTATTATCCAATTAAACAAGATTCAACTGGTTCAACAGTTGAAGGAGTTATACCATATCATGAAGGTCCCTATTTCAAAAATCAACATCCATCAAGCTATGTAGATGAGAATGGTGAAGTTATAAAAATTGTTAGAATGAAAAAGGAAGAAATTATAAATTGCGTTTGTGGCTTTGGTGAAGAAGATGGTCTAATGATTCAATGTGATTTATGTTTGTGTTGGCAGCATGGTATTTGTCACAATATTGAAAAGTCGCATCAAGTTCCAGAGAAGCATGTTTGTTTTATTTGTAAAAATCCTTATAGACAACGTTTGTCCACTAGATTTATGCATGATCAAGATTGGCTCTATGATGGGAAACTTCCAATAGCAAATTATCATGTTGAGAATCCAAAACAGACAGCTCGTTTTGATACACTCAAAGAATGTCATACTCTAATTGGCAATTTGATTGAAATGAAAAAGTTTATGAATAGTTTGGATGTGAAAATCAGCATTGCCGAAAATAGTGAGCATCCAAAATTATATTTGTGGGCAAAAAAATGGGAAGAGAGTTCACCTCGTGAGAAAAGCTCAGATTCTGATTCTAAAGATAACATTAAACTAGATGAAGATGTTAAACTGCCACTTGCTCCTGAACCTGAAGCAGCTATCGAACCGAAAAAATGTCAGCAAACGCTCCTTGATCATATTGAATTTCAACAAAACACTGTTAAATCGCGATTGGATATTATCGAAAATCAAATAACTGCACTTGAAGAAGAAGTTGTAACAAAAATTCCTAATGGAAAGAAATCAATCGACGATGCAACTTTAAAATCAACAATTTATATGCTTATTAAAGATTTAAAACAAATTAATAATTTTGCAGATATCCATCGTAATCCATTACCCGAGGAAGACTTGTAA
- Protein Sequence
- MTSRKCIIKDCESEDGHEGITFHRFPGPKGSNAEHINLWRKACKIESGFKPNKHHFVCSQHFRRENFSILNSGKIILKPLTVPSIFPWNKDNIKVTKSTITISDTESPSKKKKDDKSKEKDTEKSTPETENSNAITEKKDPEGDVVASTPVKNEDISKIESQKKKNSNSTLKKKNNLDIKEASTAKPKKSSKRLSAKYEQALIEAKKIKLEQIDTSTSEKKESKIVKTSKAKDEIKSDTPSSQTVSSSTSSSSIKSNAISFVPGNSIEVKNFDGKWVSVKIIEVDMDEREVFVKSSEKNKSKPGLNDEWISMDSPRLRPAQPAVTFEVGEKVLARWNDCRKFSATIQRVLENDTYDVLFDDGYPKIVRGVHIQKFNAKTAAKTQVAEVSLPPTPINPLLLNPPSLLPDYIKEMKEDLPKPITGENGEWCCVWVDDIPVGEESSFDGTFGKCPSIIIADNRLKEGWQKHIYLRQNGKWDVLFISPTNRKLRFKNELKVYLAETGEIYDPNVWDFSLHKKLSKAKNMCIQSDKMKKHQVLSTSFDGKESGESPVFNNPFANLGALPYVQPNLVQTPPTQNEVSVGSLKVKVIDNNYHCPDEKCDKTFRKENHLQIHIKHYHAELAKLMGECPNMEDLAYLRTTVDDTEIAMVKSNRKSHGPKEGKSKSKIDTQNSIRDFSIQIEKLSPDYKFDVQRSPILEEALKAPLITTNIHAPTKDDEIKKELVNSPIQQFDPESLIPPHAVSRPNMKSHKRKMRIRFNPKSKKSNLKKRYEYYPIKQDSTGSTVEGVIPYHEGPYFKNQHPSSYVDENGEVIKIVRMKKEEIINCVCGFGEEDGLMIQCDLCLCWQHGICHNIEKSHQVPEKHVCFICKNPYRQRLSTRFMHDQDWLYDGKLPIANYHVENPKQTARFDTLKECHTLIGNLIEMKKFMNSLDVKISIAENSEHPKLYLWAKKWEESSPREKSSDSDSKDNIKLDEDVKLPLAPEPEAAIEPKKCQQTLLDHIEFQQNTVKSRLDIIENQITALEEEVVTKIPNGKKSIDDATLKSTIYMLIKDLKQINNFADIHRNPLPEEDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249156; iTF_01250137; iTF_01250084;
- 90% Identity
- iTF_01249156;
- 80% Identity
- iTF_01249156;