Pvan003013.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- sip1
- Assembly
- GCA_018290095.1
- Location
- CM031380.1:13018467-13021440[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-61 3.7e-57 194.0 9.0 1 209 388 589 388 590 0.97 2 3 4.1e-09 3.6e-05 23.5 2.0 242 275 589 622 588 622 0.96 3 3 0.41 3.6e+03 -2.8 0.0 245 269 637 661 631 665 0.69
Sequence Information
- Coding Sequence
- atggcaGAAGAATACGAAAGATTTGAAATCACAGACTACGATCTTGATAATGAGTTTAATCCTAATAGAAATAGAAGAAAGATGACAAAGAATCAACAAATTTATGGTGTTTGGGCTGATGATAGTGAAGATGAAGGTGAAGAAACTGAATTAAAACCATCAACAAAACGTAAAGGAGGTGTCAAAGATTATACAGCACCAGTTAGTTTTGTATCTGGAGGTGTTCAACAAGCaggcaagaaaaaagaaaaagacttagtgaataaaaagaaagatgatgatgatgatgaagagagCGATCCAGAAACATCACATAAAGGAATAGGGTTTGGTAAAAGCAAAGATTCAAGTGAATCAGAAGAAGAAGTTCGTCCAACATTCTCCCAAACAGCCGGCATGCGTCAAGCAACTGGATCATTATCAAATAAAGGTCTTGGCCATTGGGAACAACATACAAAAGGAATTGGTGCAAAATTATTGCTTCAAATGGGTTATCAACCTGGTAAAGGTTTAGGAAAAGATCTTCAGGGTATATCGGCACCAGTTGAAGCTCATGTAAGGAAAGGAAGAGGTGCAATTGGTGCATATGGACcagaaaaaaagacaaaagtaCCAGAGCTGAAACAATTGGgtaaaaaacaacaaacagATGAAAAAGATGGAGAGAGAACTGATGATAAAAAACAATGGACAAAAAAAGGTCataagaagagaaatttttataaaagtgtGGAGGATGTTATAGAAAAAGCAAAGAAACCCGACTATATGCTATATGATTCAAGTAACAAATTAAGTAAAGTGACAGTAATTGATATGACAGGACCAGAGAAACGAGTTTTGAGCGGATACCATGCATTGGGGCAAATTAGGGGAACAGATGATAACTACGTTGAAATGAGACAAAAATCATCATctgaattgaagaattttcaattgccAGAGCTTatgcataatttaaatttgatagtCAACATGTGTGAACAAGATATTATTGCAAATGAAAATCGAAAAACTAATGCAGATACAAGACAGAGAACATTACAAAGTGAGAAAGAACatttggaaaaaattgttaaattggAAAAACAATATATAGAGACACTTGAAGATGTTGAAGAGCTTGTTGAACAATTAGTTGATACTGAAAACCCACCAACATTAGAAGAAgctgaaaaaacttttataaaattgaaaattgattttccaaatgaatttaaagaattttcattgtgTGATTTAGCACCTGCTGTTATTGCCCCATTAATTAGTTATGCAATTAAAGATTGGGAACCTTTACATGAACCCACAAAGCATGTCAATATTATTAAAAGATGGGCagatttacttgatttttccAAAGCATCAACTACAACACTTTTTGACCCTTATCCTGCTCTGGTTTGGTCATGCATCATCCCATATTTTCGTAAAGCAGCAAATGAAGATTGGAATCCAAAAAATCATACTCAGATGGCATCTCTGCTCGATGCATGGTCAGCACTTTTGCCTGATTGGATGTTAGATAATGTTCTTGAGCAAATTGTTCTTAATCGTTTGACATTGACTGTTACTGAATGGGATCCTTTAACTGATATTGTTCCTATTCACACTTGGATTTTACCGTGGTCGACAATTTTAGGTCATAAAATGCATGACAAtgtttataaaacaatttgtGATAAACTTAGTAAAGCATTTAGAGCATGGCATCCTCAAGATCGATCAGCATTAGCAATGATAAAACCATGGAAGAATATCTTTCaaattttcaatcaaatatgGGAATGGAATGAACTTCTCACATCGCTCGTTATGGCGAATATTctcgataaatatttttttcctaaatgGATGCAAACACTTTTACTTTGGCTCAATCAATCACCGAATTTTGATGAAGTAACGAGATGGTATAGcggttggaaaaatttattaagtgaACCTGTTttgaaacaaacaaacatCAATGAGCATTTTAGAAGAGCTTTAGAGTTGATGCAACGTGCTGCTGGAATTTCAGTGCCAATTCCCGAACCAACAATCACAATTCAACCTCCATCACTGCTTGATCTCAACATTAGACCACCAACGAATAtgaatttagattttaaagaaattgtttcACAGCAGTGTGCTGAGCGAGGAATAATTTTTGCACCAATGCCTGGTCGACGAGAAAATGGGAAGCAAGTGTATCGAATTgggaaacttttttgttattttgataaatcagTATGTTGTGTCACTGCAGATCCTGGCAGTTCTAGTTGGATGCCTATGTCTCTAAAtatcattttagaaaaagcaaagtaa
- Protein Sequence
- MAEEYERFEITDYDLDNEFNPNRNRRKMTKNQQIYGVWADDSEDEGEETELKPSTKRKGGVKDYTAPVSFVSGGVQQAGKKKEKDLVNKKKDDDDDEESDPETSHKGIGFGKSKDSSESEEEVRPTFSQTAGMRQATGSLSNKGLGHWEQHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEAHVRKGRGAIGAYGPEKKTKVPELKQLGKKQQTDEKDGERTDDKKQWTKKGHKKRNFYKSVEDVIEKAKKPDYMLYDSSNKLSKVTVIDMTGPEKRVLSGYHALGQIRGTDDNYVEMRQKSSSELKNFQLPELMHNLNLIVNMCEQDIIANENRKTNADTRQRTLQSEKEHLEKIVKLEKQYIETLEDVEELVEQLVDTENPPTLEEAEKTFIKLKIDFPNEFKEFSLCDLAPAVIAPLISYAIKDWEPLHEPTKHVNIIKRWADLLDFSKASTTTLFDPYPALVWSCIIPYFRKAANEDWNPKNHTQMASLLDAWSALLPDWMLDNVLEQIVLNRLTLTVTEWDPLTDIVPIHTWILPWSTILGHKMHDNVYKTICDKLSKAFRAWHPQDRSALAMIKPWKNIFQIFNQIWEWNELLTSLVMANILDKYFFPKWMQTLLLWLNQSPNFDEVTRWYSGWKNLLSEPVLKQTNINEHFRRALELMQRAAGISVPIPEPTITIQPPSLLDLNIRPPTNMNLDFKEIVSQQCAERGIIFAPMPGRRENGKQVYRIGKLFCYFDKSVCCVTADPGSSSWMPMSLNIILEKAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249102;
- 90% Identity
- -
- 80% Identity
- -