Pvan002635.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- retn
- Assembly
- GCA_018290095.1
- Location
- CM031380.1:26267847-26293482[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-25 3.6e-22 78.5 0.0 2 89 215 300 214 300 0.96 2 2 2.9 7.4e+03 -2.6 0.0 12 39 372 399 367 420 0.74
Sequence Information
- Coding Sequence
- ATGGATACAAGAGATTCAGACCTAGGAGACGATTCAATGTCACATATCGATGAACAATCAGATCGAGAGGAAGACTTGCGTGATTGTGATTCAAGTGATGAAGGTGTCAATGTAAACGGAATAAACGGCACATCAGGCATGAATTTCAGTCGCAACAGTCCCGATCGTAGCAGTAATGATTTACaCGATACACCATTTCCACCAACTCATCCACTAGGGATGCTGAGCAATTTAACAGCTCTCAATATGGGCGTGCCGAGTCTGCAGTCTTTTCAACAGCACAACGATgttttggaaaaaataaaaatgcaagttCGCGATATGAAAGTTGGGTTTATGAACTCTGACTTTTCTGCACTGCATCCGTCATTTACAAGTACACTGCAGAGCACTCTCGGCTTCAACGCTCATCAAGCATCACAAGCACAAAATAACAATCAAAATTCATCAACACATGGGAACAATGACTCATCCAATGgatttccattttcatcacCGACACCAGCAGCAAATAAAGATGCCTCAAACTCATCAACGTCAAGTGAAACGTCTAATTCGTCACAGCAAAACAACAATGGTTGGAGCTTTGAGGAGCAATTCAAGCAAGTGCGACAGCTTTATGAAATCAACGATGATCCGAAGCGTAAATTATTCCTCGACGATCTCTTTCTCTTCATGCAAAAGCGAGgCACGCCGATCAACAGACTTCCAATCATGGCAAAATCAGTATTGGACTTATATGAGCTTTACAACTTGGTGATAGCTCGTGGTGGTCTTGTTGATGTGATTAATAAGAAATTGTGGCAGGAAATCATTAAGGGTCTGCACCTACCATCGAGTATCACTAGTGCTGCATTTACATTAAGAACACAatatatgaaatatttgtaTCCATATGaatgtgagaagaaaaatttgagcaCGCCAGCTGAGTTGCAGAGTGCAATTGATGGCAATCGACGAGAAGGTCGACGAACAAGTTATGGACAGTTTGAATCACAAATGCAACAACAATTACAATTGccACAAATGCAAAGATCCCCTATACCGAATAGTCTTCAACAAATGTCACCACTTTCACTTGTCACACATGCAAGTCAACAGAATCAGCACCATCACAGACTAATGGGAGCACCAAGTATGGTCCCACATGATATTGAACAAAGAATGCTTGAatatattaaactttttcaagcCCCGAAAGATATAAAACgcCCACAAAGTCCACCGGATGTATCTCGTGAGGCTTTAAACGCATTAGAAATGTCGAGAATGGCTTTATGGAATATGTATAACAACACAAATCCACATCTTAATCAGCACAATCCTAGTCCACCTGAAGTACAACAAGAAGAAGCATTAAATCTTCAACAAACACCATCACCCATTCCGACTGCACCTTCACCAATTTCTATCAAACGTGAACGTGATCATAGTAGTGAAATGAATGATTATCACGCTCCGGCAGCTAAACGAGGCTTAATTCGATCAAATAGTGATCTCTCAAGAAAATCATCCatcaataataatcatcaacatcatcatcatgtcagtaataataataataataataacaataatatttCACATTTGACACCGATAAAAGACAGTAAGCGGTCAGAATCACCATCACTACAACGTCAACAGCAGtcacaaaataatgaaaacggCAGTCATCATTTGCAATCTCCCGTTAGACATCATCATAAATTACCTAATGGATTGGACTCTTTTATTCCTATTCTTAATGgaatgcaatttaaaatcatcagtaaagAGAGTTCATCAACAGGTGAACAACAGTTAGTAGTAAAATTGGAACTCAATGGAGTATCTTTTGAAGGTACACTTTTTCCTAATCTTAATCCAAACTCATCATCACCAACAACTTCAGCTTCAACTCCTTCAACTGAACCAATGATATCACCTGCAAAGCATTCATCACCAAATGATGATCACAAAATATCgtcacaacaacaacagatgATTTCTTCGTAG
- Protein Sequence
- MDTRDSDLGDDSMSHIDEQSDREEDLRDCDSSDEGVNVNGINGTSGMNFSRNSPDRSSNDLHDTPFPPTHPLGMLSNLTALNMGVPSLQSFQQHNDVLEKIKMQVRDMKVGFMNSDFSALHPSFTSTLQSTLGFNAHQASQAQNNNQNSSTHGNNDSSNGFPFSSPTPAANKDASNSSTSSETSNSSQQNNNGWSFEEQFKQVRQLYEINDDPKRKLFLDDLFLFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQSAIDGNRREGRRTSYGQFESQMQQQLQLPQMQRSPIPNSLQQMSPLSLVTHASQQNQHHHRLMGAPSMVPHDIEQRMLEYIKLFQAPKDIKRPQSPPDVSREALNALEMSRMALWNMYNNTNPHLNQHNPSPPEVQQEEALNLQQTPSPIPTAPSPISIKRERDHSSEMNDYHAPAAKRGLIRSNSDLSRKSSINNNHQHHHHVSNNNNNNNNNISHLTPIKDSKRSESPSLQRQQQSQNNENGSHHLQSPVRHHHKLPNGLDSFIPILNGMQFKIISKESSSTGEQQLVVKLELNGVSFEGTLFPNLNPNSSSPTTSASTPSTEPMISPAKHSSPNDDHKISSQQQQMISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01248881; iTF_00320376;
- 90% Identity
- iTF_01248881;
- 80% Identity
- -