Pfla036241.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polymixis flavicincta
Gene Symbol
clz9
Assembly
GCA_949987655.1
Location
OX465194.1:18719843-18722458[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-08 8.8e-06 26.8 0.0 4 36 11 43 8 49 0.91

Sequence Information

Coding Sequence
ATGGCGCCGGTGAAAAATTATACACCACTTCAAATGCAACATGCTTTGGAAGCAGTAAAAAAAGGAGAGAGCGTGTGCTCTGCCGCCAAAAAATATGGCGTACCACGCATAACCTTACACAATAAGTGCACTGGTAAGAGTCCGGCAGTATGTTCTATGGGCCCATCGTCAATATTGacgaaagaagaagaagaaatttTGGTAAAATGGTTATTCGCTATGTCAGAAAGGCACTGTCCAGTGGCTAAAGAACAGCTACTGGACAGTGTCCAGGCGATTgttaaatcaaataataaacagACGCCTTTTACCGATGGTAGACCAGGGCGCAAATGGTACCAAGCGTTTCTTAAACGTCACCCTGAAGTGTCTGAAAGGCTTTCTCAAAACTTGACAACATCTAGAGAAGCTGTAACCGAAAAACAAATAACTAGCTGGTTTTCTGAAGTTGGTGATTATTTACATAACCAAGGTCTTGGCGACGTAATGAAGGATCCCACGAGAGTATTCAACACGGACGAAAGTGCCTTCTTTCTAAATCCAAACCCTGGTCATGTCTTGGTGAAAAAAGGCGACAAAAATGTATACAGCGTTTCAGGGAACGAAAAAGAAAATCTTACTGTGCTCATTACTGCAAATGCAGCAGGACAATTAGCACCGCCGATGATAGTTTTTGCATACGAGCGAGTTCCAAAGCATATTGCAGAAAGCGTTCCAAACTCATGGGCTATAGGTAAATCCGAAAGTGGTTGGATGTGCAGCAGCACATTCTATGAATATATCACGAACATCTTTCACCCCTGGCTtattgaatacaaaataaaactgccAGTGGTTTTCTTCCTAGATGGCCATGCCTCACACGTCACAAAACATCTATCAGACTTTTGTTCACAGAGTCAAATTGAAATTATTACGCTGTATCCTAATAGCACACATTTGCTACAGCCAATGGATCTCGCAGTTTTCAGACCACTAAAAGCATTCTGGCGTAAACATGTTCGCTTATGGAAAACCGAAAACTTGGGGCAGCAAGTCAAAAAAGACAAATTTGCAAATATACTAAAGAGTGCTCTAGAAGAACTCTCACAAGAAAGCATTAAGAATGGTTTTCGGGCTGGAGGTTTGTTTCCATTTGGTCCGGAATATGTTGATTTTTCTAAAATGCATGCCCATAACAGAAGATCGACAAATGCTACTCAACATTTCACACAGCAGGACTTGGAGTTCATAACGAAACTGGAACAGGAAATAGTCAAAACGTTCACACAGTCAAAACTGGACTTATATAAAAGATGTTTCTATATCCCGAGAACTGATTTGAATAACGTTTTGCCAGATGAAGATTTAACTCTATACACAATTTGGGCAAAGTATAAACAGTTGTGTCATGCAAATAGAGTCGAATTTGAAAATCAGGAAGTGGCAACAGAGCAAATGGGAAAAGAAAGTAACACTGGTCCAGAGCAGATTTCTGAGGACATCATTGCAACTCGCCAAGAAGACGCTAACACTCTCTGTAGctcttatttgaaaaatattccATCGACATCCTTTGCAGAAGTAAACGAAGATACAACTACGATTATGCCATACAACACATGTATCAGTACCGGGCCAGACATACTTCAAAACCAGGAATTTTTCAATATGACACAAAAAACTCCGATTAAAAATGTGCCATCGACGAGTTTTGCAGAACACATGTTATGTGAACAAAACATCATAGTACCATCACCATTTAAGAAAGCTCTTTTCTGGCCGGAACCCACTATAAAAAAGAAAGGAAGGATCTCAAAAGAAAAGCTACCATCAACAATTACGAGTCAAGCTTGGAGAGAATTTCATAGGAAGAAggaattggaaaaaaaaaataaagaagaagaaaaagaaaaacgaaaACAGGAAAGAATAGAAAACAAGACCAAACGTGACCAAACGAAAAATGCAAGTCGCAACGGAAATAAAACCAAGAATAGAAAACGTAGAAAGCAATCCGTAACATCGAGTGATACTGAAGACAGTGATATAACATATGCAGAGTCAGGTGAAAGTGAAATTGAGTTTGAAACAGATTTGGATAACAACACTGAAAATGAACGGCCACATGGAGAGAAAGAGGAGAACAATGACGGAGGAAAAGAATGCAAGGTGAAGCGAACAGTAGGAAGACAAAACGTTTTAACAGAAACTATTCATACGCCAAACCGTACCTGTCCAATACTAATATCGAGCAGTTTTGACGTGCAAACGATACTAGACGATAAAACTGGAAAATTCAAAGTATCCAAACAACGTAGATCATCTGATCCAAGTTGTTCAGATAATTTGAATGTTCCAAATGGACTGTCAGTCGGAAAATATGTTCTTGTCAAATTCGATGGCAAGAGTACAACAAAGACTTACCGTTACGTGTGTATGATACAAGAAATTTTTAAACGTAAGGTGGTAGTTCAAGGACTGCGTAGCTGTAAATcgaaaactagttttaaaataatcgaaAAAGATGTGTCCATAATTGATGAGACTGATATCTTAAGTTATTTACCCGAGCCTAAAcgccaaaataatatttttgtttttcctcAAGTCATTGATGTGAAAGAAttaatttag
Protein Sequence
MAPVKNYTPLQMQHALEAVKKGESVCSAAKKYGVPRITLHNKCTGKSPAVCSMGPSSILTKEEEEILVKWLFAMSERHCPVAKEQLLDSVQAIVKSNNKQTPFTDGRPGRKWYQAFLKRHPEVSERLSQNLTTSREAVTEKQITSWFSEVGDYLHNQGLGDVMKDPTRVFNTDESAFFLNPNPGHVLVKKGDKNVYSVSGNEKENLTVLITANAAGQLAPPMIVFAYERVPKHIAESVPNSWAIGKSESGWMCSSTFYEYITNIFHPWLIEYKIKLPVVFFLDGHASHVTKHLSDFCSQSQIEIITLYPNSTHLLQPMDLAVFRPLKAFWRKHVRLWKTENLGQQVKKDKFANILKSALEELSQESIKNGFRAGGLFPFGPEYVDFSKMHAHNRRSTNATQHFTQQDLEFITKLEQEIVKTFTQSKLDLYKRCFYIPRTDLNNVLPDEDLTLYTIWAKYKQLCHANRVEFENQEVATEQMGKESNTGPEQISEDIIATRQEDANTLCSSYLKNIPSTSFAEVNEDTTTIMPYNTCISTGPDILQNQEFFNMTQKTPIKNVPSTSFAEHMLCEQNIIVPSPFKKALFWPEPTIKKKGRISKEKLPSTITSQAWREFHRKKELEKKNKEEEKEKRKQERIENKTKRDQTKNASRNGNKTKNRKRRKQSVTSSDTEDSDITYAESGESEIEFETDLDNNTENERPHGEKEENNDGGKECKVKRTVGRQNVLTETIHTPNRTCPILISSSFDVQTILDDKTGKFKVSKQRRSSDPSCSDNLNVPNGLSVGKYVLVKFDGKSTTKTYRYVCMIQEIFKRKVVVQGLRSCKSKTSFKIIEKDVSIIDETDILSYLPEPKRQNNIFVFPQVIDVKELI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00036600;
90% Identity
iTF_01221471;
80% Identity
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