Pcas004831.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:18098019-18099593[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0015 36 5.0 0.1 26 48 82 104 78 110 0.90 2 9 0.029 6.9e+02 0.9 0.1 25 48 111 134 103 138 0.82 3 9 0.0011 26 5.4 0.2 21 46 166 191 161 198 0.83 4 9 0.13 3.2e+03 -1.3 0.0 25 48 200 223 195 224 0.82 5 9 4.6e-06 0.11 13.0 0.0 20 44 254 278 246 285 0.85 6 9 0.0001 2.5 8.7 0.1 16 48 318 350 315 353 0.86 7 9 1.3e-05 0.3 11.6 1.0 23 48 353 378 350 382 0.90 8 9 0.022 5.4e+02 1.2 0.3 24 48 384 408 379 412 0.86 9 9 0.33 7.8e+03 -2.5 0.1 27 48 444 465 440 470 0.83
Sequence Information
- Coding Sequence
- atggatACTGAAGTGGAACAGGTGTATGTGAAGCCTGATATTTCACACATTAAAATAGAAATCAGTTTGGAGAGTGACAATGACAACCCATATCAATCTCCAGAGAGTGCCTTCAACATGAAGGAAGAGACGGCCGAGGGCTTTGAAGATAgtcaaaatgaaattattgaaACATCAGGTGAGATTACAAAGTCTATGGAATTGGTCGGTAAAGTGTATGAAAATGGAAAAAGAAACAGACTGGGTTGCCCTCAATGTGAGAATACTTTTAAGAATAGAGCAAATTTAAagcaacatttaaaatatgtacacTCATCAGAAGATGATATTGTAGAATGTGATCAGTGCTACCGCACATTTAAGTCTGTGGGCCATTTGCGATCACACATAAGTTCAGTCCATGTTGAGAATAAGGAGGTAGACTGTGAGTATTGTGGAAaacgttttttaaataaaaagaaattaagtaATCATATATTTTACTCACACCCAGAGCCCGAAGAGAGTGTAAACTGCAAGATTTGttctaaagtttttaaaaggaaatataatttgaatgtGCACATGAGACATGTACACCCTACAGAAGACAGGTCTGTAAAGTGCCCCCATTGTGATAAGAAATTTAAGGTAGATATGTTACTTCAAAGGCATATAAAATGGAGTCACCCTGAAGATGGAATGATGTACCGCTGCCCGGAATGCGGGCGGACTCTACCTTCCATAGCATGTTTTAGGAAGCACATGAGAAATGTCCACTCAGCATCACAAGATGCGCTGTGCAATGTATGCTTCAAGgtctttaaaaatgttaaaacattAAGGCGACATGAGAAGAATTTACATGGTGGCGAGAAGGTGGTGACCAAACAATATAGAAAAGGAGACCTCCCATGCCCAGAATGTGATAAGAAGTTTACAACAAACACTGCTCTCTTTTGGCATTTTGAGAGACATCATTCAGAGAACAAAAGAATAACTTCATGTAATATTTGTGCCAAAGAGCTCGCTGACCAGGGCAGCTTGAAGCGTCATTTAGAAATGGTACATTCGATAGAAAATGCGACATGCCACATCTGCCACAAAACTTTTAAAAGTCCAATGAATCTACAGAGACATATTAGAGTGACACACGCACCCCCTGAGGCGGCTCAAAGTTGCGACATATgtcaaaaaacatttaaatgcGCAATGCATCTGAGAATACACGTAAATACGGTACATTCTACAGCAGGTATTTTTACCTGCGACATATGCAATAAAGACTTCGCGTCTAGGAAATACATGCTGAAGCATAAAAAAACTCATGTAGACACGAAAGAATTTCCGTGCGATCTGTGtcataaaatgtttaagtGTGTGAATGATGTtaaaaaacatgttaaaagagtgcataataaaaaagtaaaagttGAGAACGAAAATCTGAATTCACAAGATGGGAGTAGGAATTGTCTGAAGTGTGGGatcaattttgaaaatgatgAGCAATTACACTCGCACATCTTGAAATGTGGGATGGAGGAAGTGACAAACCCTTTGACGATTGTTAAAATAGAGTTGGAAGCGGAATAG
- Protein Sequence
- MDTEVEQVYVKPDISHIKIEISLESDNDNPYQSPESAFNMKEETAEGFEDSQNEIIETSGEITKSMELVGKVYENGKRNRLGCPQCENTFKNRANLKQHLKYVHSSEDDIVECDQCYRTFKSVGHLRSHISSVHVENKEVDCEYCGKRFLNKKKLSNHIFYSHPEPEESVNCKICSKVFKRKYNLNVHMRHVHPTEDRSVKCPHCDKKFKVDMLLQRHIKWSHPEDGMMYRCPECGRTLPSIACFRKHMRNVHSASQDALCNVCFKVFKNVKTLRRHEKNLHGGEKVVTKQYRKGDLPCPECDKKFTTNTALFWHFERHHSENKRITSCNICAKELADQGSLKRHLEMVHSIENATCHICHKTFKSPMNLQRHIRVTHAPPEAAQSCDICQKTFKCAMHLRIHVNTVHSTAGIFTCDICNKDFASRKYMLKHKKTHVDTKEFPCDLCHKMFKCVNDVKKHVKRVHNKKVKVENENLNSQDGSRNCLKCGINFENDEQLHSHILKCGMEEVTNPLTIVKIELEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246122;
- 90% Identity
- iTF_01246122;
- 80% Identity
- iTF_01246122;