Pcas004831.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:18098019-18099593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.4e-05 0.0054 17.5 0.9 3 23 83 104 83 104 0.97 2 14 0.00022 0.013 16.3 1.0 2 23 112 134 111 134 0.95 3 14 0.0035 0.2 12.6 1.5 3 23 142 163 141 163 0.93 4 14 3.4e-07 1.9e-05 25.2 2.5 3 23 172 193 170 193 0.95 5 14 4e-05 0.0023 18.7 1.5 2 23 201 223 200 223 0.96 6 14 3.8e-05 0.0022 18.8 1.0 1 23 230 253 230 253 0.98 7 14 0.00066 0.037 14.9 1.6 3 23 261 282 260 282 0.96 8 14 1.4e-05 0.00082 20.1 1.2 2 23 298 319 297 320 0.93 9 14 0.0012 0.069 14.0 0.1 2 23 328 350 327 350 0.95 10 14 4.9e-07 2.8e-05 24.7 4.7 2 23 356 378 356 378 0.97 11 14 0.0053 0.3 12.0 3.4 2 23 386 408 385 408 0.96 12 14 7.7e-05 0.0044 17.8 2.7 1 23 414 436 414 436 0.99 13 14 0.21 12 7.0 4.2 1 23 442 465 442 465 0.95 14 14 0.048 2.7 9.0 0.3 3 21 485 503 484 504 0.93
Sequence Information
- Coding Sequence
- atggatACTGAAGTGGAACAGGTGTATGTGAAGCCTGATATTTCACACATTAAAATAGAAATCAGTTTGGAGAGTGACAATGACAACCCATATCAATCTCCAGAGAGTGCCTTCAACATGAAGGAAGAGACGGCCGAGGGCTTTGAAGATAgtcaaaatgaaattattgaaACATCAGGTGAGATTACAAAGTCTATGGAATTGGTCGGTAAAGTGTATGAAAATGGAAAAAGAAACAGACTGGGTTGCCCTCAATGTGAGAATACTTTTAAGAATAGAGCAAATTTAAagcaacatttaaaatatgtacacTCATCAGAAGATGATATTGTAGAATGTGATCAGTGCTACCGCACATTTAAGTCTGTGGGCCATTTGCGATCACACATAAGTTCAGTCCATGTTGAGAATAAGGAGGTAGACTGTGAGTATTGTGGAAaacgttttttaaataaaaagaaattaagtaATCATATATTTTACTCACACCCAGAGCCCGAAGAGAGTGTAAACTGCAAGATTTGttctaaagtttttaaaaggaaatataatttgaatgtGCACATGAGACATGTACACCCTACAGAAGACAGGTCTGTAAAGTGCCCCCATTGTGATAAGAAATTTAAGGTAGATATGTTACTTCAAAGGCATATAAAATGGAGTCACCCTGAAGATGGAATGATGTACCGCTGCCCGGAATGCGGGCGGACTCTACCTTCCATAGCATGTTTTAGGAAGCACATGAGAAATGTCCACTCAGCATCACAAGATGCGCTGTGCAATGTATGCTTCAAGgtctttaaaaatgttaaaacattAAGGCGACATGAGAAGAATTTACATGGTGGCGAGAAGGTGGTGACCAAACAATATAGAAAAGGAGACCTCCCATGCCCAGAATGTGATAAGAAGTTTACAACAAACACTGCTCTCTTTTGGCATTTTGAGAGACATCATTCAGAGAACAAAAGAATAACTTCATGTAATATTTGTGCCAAAGAGCTCGCTGACCAGGGCAGCTTGAAGCGTCATTTAGAAATGGTACATTCGATAGAAAATGCGACATGCCACATCTGCCACAAAACTTTTAAAAGTCCAATGAATCTACAGAGACATATTAGAGTGACACACGCACCCCCTGAGGCGGCTCAAAGTTGCGACATATgtcaaaaaacatttaaatgcGCAATGCATCTGAGAATACACGTAAATACGGTACATTCTACAGCAGGTATTTTTACCTGCGACATATGCAATAAAGACTTCGCGTCTAGGAAATACATGCTGAAGCATAAAAAAACTCATGTAGACACGAAAGAATTTCCGTGCGATCTGTGtcataaaatgtttaagtGTGTGAATGATGTtaaaaaacatgttaaaagagtgcataataaaaaagtaaaagttGAGAACGAAAATCTGAATTCACAAGATGGGAGTAGGAATTGTCTGAAGTGTGGGatcaattttgaaaatgatgAGCAATTACACTCGCACATCTTGAAATGTGGGATGGAGGAAGTGACAAACCCTTTGACGATTGTTAAAATAGAGTTGGAAGCGGAATAG
- Protein Sequence
- MDTEVEQVYVKPDISHIKIEISLESDNDNPYQSPESAFNMKEETAEGFEDSQNEIIETSGEITKSMELVGKVYENGKRNRLGCPQCENTFKNRANLKQHLKYVHSSEDDIVECDQCYRTFKSVGHLRSHISSVHVENKEVDCEYCGKRFLNKKKLSNHIFYSHPEPEESVNCKICSKVFKRKYNLNVHMRHVHPTEDRSVKCPHCDKKFKVDMLLQRHIKWSHPEDGMMYRCPECGRTLPSIACFRKHMRNVHSASQDALCNVCFKVFKNVKTLRRHEKNLHGGEKVVTKQYRKGDLPCPECDKKFTTNTALFWHFERHHSENKRITSCNICAKELADQGSLKRHLEMVHSIENATCHICHKTFKSPMNLQRHIRVTHAPPEAAQSCDICQKTFKCAMHLRIHVNTVHSTAGIFTCDICNKDFASRKYMLKHKKTHVDTKEFPCDLCHKMFKCVNDVKKHVKRVHNKKVKVENENLNSQDGSRNCLKCGINFENDEQLHSHILKCGMEEVTNPLTIVKIELEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246108; iTF_01246494;
- 90% Identity
- iTF_01246108; iTF_01246494;
- 80% Identity
- iTF_01246108; iTF_01246494;