Pcas004831.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:18098019-18099593[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0024 7.1 7.1 0.8 14 44 78 105 73 105 0.87 2 13 0.0075 22 5.5 0.8 5 43 101 134 100 135 0.90 3 13 0.0066 20 5.7 3.0 8 40 131 160 126 164 0.74 4 13 1.1e-06 0.0034 17.8 2.9 7 44 160 194 156 194 0.92 5 13 0.00087 2.6 8.5 1.9 6 42 191 222 190 224 0.75 6 13 0.00075 2.2 8.7 1.6 10 44 223 254 216 254 0.88 7 13 0.0082 24 5.4 0.3 16 38 258 277 255 282 0.88 8 13 3.2e-05 0.094 13.2 1.9 3 44 313 351 311 351 0.86 9 13 0.00022 0.64 10.5 2.9 16 43 354 378 352 379 0.90 10 13 0.42 1.2e+03 -0.0 1.8 18 28 386 396 380 409 0.70 11 13 0.098 2.9e+02 2.0 2.3 13 29 410 426 399 436 0.79 12 13 0.65 1.9e+03 -0.7 4.7 15 44 440 466 426 466 0.78 13 13 0.88 2.6e+03 -1.1 0.1 14 29 480 495 475 504 0.74
Sequence Information
- Coding Sequence
- atggatACTGAAGTGGAACAGGTGTATGTGAAGCCTGATATTTCACACATTAAAATAGAAATCAGTTTGGAGAGTGACAATGACAACCCATATCAATCTCCAGAGAGTGCCTTCAACATGAAGGAAGAGACGGCCGAGGGCTTTGAAGATAgtcaaaatgaaattattgaaACATCAGGTGAGATTACAAAGTCTATGGAATTGGTCGGTAAAGTGTATGAAAATGGAAAAAGAAACAGACTGGGTTGCCCTCAATGTGAGAATACTTTTAAGAATAGAGCAAATTTAAagcaacatttaaaatatgtacacTCATCAGAAGATGATATTGTAGAATGTGATCAGTGCTACCGCACATTTAAGTCTGTGGGCCATTTGCGATCACACATAAGTTCAGTCCATGTTGAGAATAAGGAGGTAGACTGTGAGTATTGTGGAAaacgttttttaaataaaaagaaattaagtaATCATATATTTTACTCACACCCAGAGCCCGAAGAGAGTGTAAACTGCAAGATTTGttctaaagtttttaaaaggaaatataatttgaatgtGCACATGAGACATGTACACCCTACAGAAGACAGGTCTGTAAAGTGCCCCCATTGTGATAAGAAATTTAAGGTAGATATGTTACTTCAAAGGCATATAAAATGGAGTCACCCTGAAGATGGAATGATGTACCGCTGCCCGGAATGCGGGCGGACTCTACCTTCCATAGCATGTTTTAGGAAGCACATGAGAAATGTCCACTCAGCATCACAAGATGCGCTGTGCAATGTATGCTTCAAGgtctttaaaaatgttaaaacattAAGGCGACATGAGAAGAATTTACATGGTGGCGAGAAGGTGGTGACCAAACAATATAGAAAAGGAGACCTCCCATGCCCAGAATGTGATAAGAAGTTTACAACAAACACTGCTCTCTTTTGGCATTTTGAGAGACATCATTCAGAGAACAAAAGAATAACTTCATGTAATATTTGTGCCAAAGAGCTCGCTGACCAGGGCAGCTTGAAGCGTCATTTAGAAATGGTACATTCGATAGAAAATGCGACATGCCACATCTGCCACAAAACTTTTAAAAGTCCAATGAATCTACAGAGACATATTAGAGTGACACACGCACCCCCTGAGGCGGCTCAAAGTTGCGACATATgtcaaaaaacatttaaatgcGCAATGCATCTGAGAATACACGTAAATACGGTACATTCTACAGCAGGTATTTTTACCTGCGACATATGCAATAAAGACTTCGCGTCTAGGAAATACATGCTGAAGCATAAAAAAACTCATGTAGACACGAAAGAATTTCCGTGCGATCTGTGtcataaaatgtttaagtGTGTGAATGATGTtaaaaaacatgttaaaagagtgcataataaaaaagtaaaagttGAGAACGAAAATCTGAATTCACAAGATGGGAGTAGGAATTGTCTGAAGTGTGGGatcaattttgaaaatgatgAGCAATTACACTCGCACATCTTGAAATGTGGGATGGAGGAAGTGACAAACCCTTTGACGATTGTTAAAATAGAGTTGGAAGCGGAATAG
- Protein Sequence
- MDTEVEQVYVKPDISHIKIEISLESDNDNPYQSPESAFNMKEETAEGFEDSQNEIIETSGEITKSMELVGKVYENGKRNRLGCPQCENTFKNRANLKQHLKYVHSSEDDIVECDQCYRTFKSVGHLRSHISSVHVENKEVDCEYCGKRFLNKKKLSNHIFYSHPEPEESVNCKICSKVFKRKYNLNVHMRHVHPTEDRSVKCPHCDKKFKVDMLLQRHIKWSHPEDGMMYRCPECGRTLPSIACFRKHMRNVHSASQDALCNVCFKVFKNVKTLRRHEKNLHGGEKVVTKQYRKGDLPCPECDKKFTTNTALFWHFERHHSENKRITSCNICAKELADQGSLKRHLEMVHSIENATCHICHKTFKSPMNLQRHIRVTHAPPEAAQSCDICQKTFKCAMHLRIHVNTVHSTAGIFTCDICNKDFASRKYMLKHKKTHVDTKEFPCDLCHKMFKCVNDVKKHVKRVHNKKVKVENENLNSQDGSRNCLKCGINFENDEQLHSHILKCGMEEVTNPLTIVKIELEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246122;
- 90% Identity
- iTF_01246122;
- 80% Identity
- iTF_01246122;