Pcas021355.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149065.1:4246048-4251363[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.066 3.8 8.6 0.8 2 23 12 34 11 34 0.95 2 38 0.00052 0.029 15.2 1.5 1 23 39 62 39 62 0.97 3 38 2.8 1.6e+02 3.5 0.1 3 23 223 245 222 245 0.92 4 38 0.01 0.59 11.1 0.3 3 23 252 273 250 273 0.95 5 38 0.0026 0.15 13.0 0.8 2 23 279 301 278 301 0.91 6 38 0.0043 0.25 12.3 1.7 1 23 306 329 306 329 0.95 7 38 0.00018 0.01 16.7 4.5 1 23 333 356 333 356 0.98 8 38 0.0058 0.33 11.9 0.7 2 23 363 384 362 384 0.96 9 38 0.38 22 6.2 0.7 1 10 390 399 390 403 0.96 10 38 0.26 15 6.7 0.2 1 23 443 465 443 465 0.95 11 38 0.095 5.4 8.1 0.4 2 21 493 512 492 515 0.93 12 38 0.29 16 6.6 1.2 2 23 536 558 535 558 0.96 13 38 0.0019 0.11 13.4 3.0 2 23 564 586 563 586 0.96 14 38 0.11 6 7.9 0.3 1 23 591 614 591 614 0.94 15 38 0.00056 0.032 15.1 0.8 2 23 617 639 616 639 0.96 16 38 0.013 0.71 10.8 6.5 1 23 721 744 721 744 0.97 17 38 0.029 1.6 9.7 0.4 2 23 772 794 771 794 0.95 18 38 0.00015 0.0086 16.9 0.2 1 23 816 839 816 839 0.92 19 38 4.2e-06 0.00024 21.8 0.8 3 23 846 867 845 867 0.95 20 38 0.0009 0.051 14.4 0.3 1 23 873 896 873 896 0.96 21 38 0.00019 0.011 16.6 0.1 3 23 903 924 901 924 0.96 22 38 0.00033 0.019 15.8 4.5 1 23 928 951 928 951 0.97 23 38 0.0064 0.36 11.8 0.4 2 23 958 979 957 979 0.97 24 38 0.0023 0.13 13.2 1.5 1 23 1024 1046 1024 1046 0.95 25 38 4.5 2.6e+02 2.8 0.9 2 23 1074 1096 1073 1096 0.95 26 38 0.028 1.6 9.7 2.1 1 23 1116 1139 1116 1139 0.96 27 38 0.0012 0.069 14.0 0.3 1 23 1144 1167 1144 1167 0.95 28 38 0.0021 0.12 13.3 1.2 1 23 1172 1195 1172 1195 0.98 29 38 0.00034 0.019 15.8 2.1 2 23 1198 1220 1198 1220 0.96 30 38 0.34 19 6.3 0.8 2 21 1227 1246 1226 1247 0.93 31 38 0.0045 0.26 12.2 1.6 1 23 1303 1326 1303 1326 0.97 32 38 0.0098 0.56 11.2 0.2 2 23 1399 1422 1398 1422 0.95 33 38 0.00012 0.0069 17.2 0.3 3 23 1429 1450 1428 1450 0.94 34 38 0.062 3.5 8.7 4.3 2 23 1455 1477 1454 1477 0.93 35 38 0.001 0.059 14.2 3.2 1 23 1482 1505 1482 1505 0.98 36 38 1.1e-05 0.00065 20.4 5.0 1 23 1509 1532 1509 1532 0.97 37 38 0.00082 0.047 14.6 0.3 2 23 1539 1560 1538 1560 0.96 38 38 2.3e-05 0.0013 19.4 0.4 1 23 1566 1588 1566 1588 0.98
Sequence Information
- Coding Sequence
- ATGTACTTGGAGCAGTTTAAATTGATAGACCTCAGCTGCCCTGTGTGCCAAGAACATTTTACAGAAATGATTTTCCTAACGACACACGTCAGAAACATGCATTCGACTAACTTTTTTCAATGCGAAAGGTGTTCTGAAGTGTTTAACAAGAAAAGGGAATTGAGGCTTCACCAAAAACTACTCCATCCGGAAGAATACGTGTATGAGACGCAAAAGTATTGCGTGAAAGAGGAGCCAGGAATAAGTAATGTCAAAGTGAAAGCGAACGATTTTGATCATTCGGAAAAAAGGCGAAAGGCTAAACTGAGGCGAGAGAACATTGCGTGTATTTTAAACACTTCGACAGCTACACCGTTCAAATATTACATGAATAGATTTAGatgtttttattgttctaAAAATCATACCGAATTTGAGCCAATTAGAGATCATATAGCTAGTAAGCACTCGTACTGCGATCCTTCTGGTAAAGCCATGAAAGCGGTTAAAGGAAAGGATGCTATAGTCAAATTAGACATAAGTTCACTCACTTGCAAACTGTGTTGTATGTCGGTCGACGATCTAGACGCTTTATCAGATCATTTGATATCAAATCACAAAACGAAATATGATAAATCCATGATAAGcatcgtccagccgtttaaAATAGCTAAAGACAACATGGCTTGTCCCATCTGTCCAAATGTCGTGTTTAGGTATTTTGTGAAATTGCTAGAACATATGAACGATAGTCACTCGAATAATAATGTCATTTGCGTGTACTGCGGCCAAACGTTTAGGAATACACCGTCGTATAGAGGTCATCTGTCGAGATACCATCGGACTAGCGCTTGTAAGTGTTCAGAATGTGATTTGGAGTTTTCTAATCTAGCTAAATTAACGGCGCACAAAGCGAACGCTCACGGCGCCAAAGCTTTCAAATGCTCGAAATGTAACGAAAAGTTTTCCACTATCTATCTTAGACAAAAACATTTGATGGACGCTCACGACTCTGGCCACAAATGCACATATTGCAACAGGCTTTTTGCTAGAAACTCTTATATGAAAAATCATATAAGGAGGTTGCATCTCAAGGAGAAGAACGTCGAGTGTTCAGTGTGCAAGGAAAAGTTTTTCGACAAAACTAGATTAAATATTCACATGGTGAAACATATCGGAGAGAGAAattatcactgcgacatatgtGGGAAAACGTTCCTGTGGAAGAAAAATTTAAGAGATGAAATTGGGCTGAAAAACGTGAAAAGTGCCAATTATCGCAAGAGGAGAAATCTGCAAATATTATTCAACAACACGTCCCTGATACCATTCAAATGGCGTCAGAAATATCTTTGCTTTTACTGTGGCGATGATCTGGCGGATTACGATTTGTTGAAAAAACATACGAGAGCACACGGCGCGTGCTCGCTCACAGACCGCGCGCTGAGACGCGTCTCGGGGACCGATATCGAGATCAAAATAGACGTATCAGAGACCGTATGTGAAATATGTGACGAAGAATTGCCCACGTTCGACAACCTTATCAACCATTTGATGTGCAAACATAATTTGCCCTACGATAAAAACTCCGATCTCATCATAATGAAGTACCGCCTGGTCGATCTTAAATGTTTATTGTGTGAGGACAGCTTCAATCATTTTAGCAAGCTCATAGTTCACGCGAACACTAGTCATCCGATGAAGTTTCTTTCTTGCGATGTGTGCCATCAAAAGTTTAATAAACAGAGGGATCTGACGGCGCATTTCAGGTCGTATCATAAGAAGGAAGGGTATAATTGTGCGCAGTGCGCTATCAGCTTTCCAACTAATTGGGCGCTGAGTAACCACAAATTCAAGTCTCATTCGTCTGTTTGTAACATCTGCTTCAAGAGTTTCGCCTCCTCCGATAAAAGATTAAAACATATGAAGGTGGAACATGTTGACGACGAGTATTTGCAGTGCGggttttgtttgaaaataatgaacaCTAAACAGGGTTTTTTGCGACACGCTACCAACTGTACTTCTATGAGCGACGATTTGAAAGCGCAGCACATCATCGACGAAGTCGTCTCCATAGACGATATCGAGAAAAAGCCAAACGTTAAGCAGATTAGGAATAATTTAGCATGTATTCTGAATATGACCACGGCTATCCCGTTTAAACATTTCATGAACAAGTTTAGGTGTTTCTATTGCACTAAGCACTTTACGGAATGCGATGATCTCAAAGAACACACGATCACGCAGCATCCGCATTGCGATTCTAAACTGAAGGCCATGCGGCTGCGCAACCGAGAAGATATTTCCATAAAGATAGACACTTCATCCTTATCTTGTAAGATTTGCTTCGAATCGCTGAACGATCTCGAACATTTAATCGATCACATAACTTCTGAACACAAAACTCGTTACGATAAATCCGTTGATGTCAATGTTCAACCTTATAAGTTAGTGAAAGATAATTTCCCTTGTCCGTTTTGCGGCGAGGTGTTTAGGTACTTTAGCACTCTGTTGAGACACGTGAGCGGCGCGCACACCgataacaaaaacatttgcATGTACTGCGGGAAATCGTTTAGGACGAAACCAAACTTACGGGCGCATATTACGCGGCGGCACAGGGTAGAGAaggcatacaaatgtatgacTTGCAAAATAGAGTTCGCTAGGAACATAGACCTGCGTACGCATATGGGTAGGGCCCACGGCAACAAAATGATAGACTGTACGGAATGCCCTGAGAAGTTCGTGTCTCAGTACTCGATGCAGAGGCATCTGATCACGGCGCACGGATCCGGACACAAGTGCACTTACTGCGGCAAATTGTTCACGAGGAACTCTTTCATGGACAACCACATTAGACGGACGCATTTGAAAGAGAAAAACGTTCAGTGCTCTCTGTGTAACGAAAGGTTTTTCGATATGGCTCTCCTCAAAATGCACATGGTGAAACACATCGGCGAACGAAACTTTCACTATGAATATCCGCACCACCCGTACGACGGCTGTACCTCTCAGCGGAGGAGGAAAAATTTGCAAATTCTGTTCAATAACACATCGGTGATGCCTTTCAAATGGCGCGGGACGTACCTATGTTTCTACTGCGGAAAGAGCTATACCGAATACCCAGAGTTTAAAAAGCACACGAAAGCGCACGGCCTCTGCTCCACCAATGACTATTCACTTAAAATAATCAAGGGCAGTCATATAGAAATCAAGATCGACGTGTCGGATGTTGTTTGTGAAATTTGTTGCGAACCGTTCGCTAGTTTCCACGATGTGGTCCAACATTTGAATAGCAAACACAATTTGAAATACGATACTGAGATCGATATACCGTTCCAACAGTACAGGCTGGCTGACTTCAGGTGTTTGCTGTGCCACGAGCAATTCACCTATTTCGGTTACTTAGTGAAACACGTGAATAATGTTCATCCccaaaattgttttatttgtgacGATTGTGGATTGACGTTTAATAAGAAGAGAGACATGGCGTTACACGTGAGAGATAATCACCGGCAAGGCGGCTACTCCTGCGACCAATGCAAAGGAGTTTTTGCGACAAAGAGCATATTGAGGAAACATCAAAACACATTTCATTTTAGGAAATGTAACGATTGCTCTTTGACGTTTGCTTCTCGAAGTCTGCTGCATAAACACGTTAGGTTAGACCACCCAGACGATGGAAGCTTAAAGTGTGCTTACTGTACAAAAGAACTGCATTCCAAACAAGGTCTGAAAcagcatttgatcaaatgtgAGCTAAAAATGTTATCGCAGATCGGATCTCGCAATCAAAATGTTTTCCCAGAAGAATCATACGTAGAGCCCAAAAAGAAACAGAATATTCTACAAATTAGACAGAATATACAGTGTGTACTGAACATGTCTACTGCTATACCTTTTAAGTTTTTCTCGAAGTATTCCTGCTTCTATTGTTCGAAAAAGTTTATAGAATTTGACGAGTTGAAAGAACACACGTTGAGGGAACATCCTGTTTGTGATGTTAAATCTAAGTGCATGAAAAAATGCAAGGGGGAAAGGATTAGTGTGAAAGTGGACGTGGCATGTCTAGCTTGCAAAATCTGCTGTCAACCAATAGACGATTTAGACGTTCTCGTAGATCACTTAATAGTCGAACATAATGCTAACTACGATAAATCAATGAAACGCTGCTTCGAACCATTTAGAATCATAAAGGACAACATACCCTGTCCCTTATGTCCTGATAGGACCTTTCGGTACTTCAGCACTCTTTTACGACACATAAACTCCGAGCACAGCAACAATAATAGAATATGCGATTTTTGCGGACGTAGTTTCAAAAACGTAACCAATTTAAAAGTTCACATAACGTACGCTCACACCGGTTCGTGCGAGTGCGACGTTTGTAGTCTCAAATTTAAGAACCAGTGGTGTTTAGCGCGACACAAAGCTAAAACTCataacgctaaagactataAATGTCCCAAGTGCCCTGAACAATTCCAATCGCAGTATCACAAACAGAAGCATCTCATCACTTCACACGATATTGGACACAAGTGTAGTTATTGTGGGAAAATGTTCACAAGGAACTCTTTTATGAAAGATCATATACGTCGCACGCATTTGAAAGAGAAGAACGTGCCGTGTTCGGTTTGCAATGAGAAGTTCTTCgacaattatttattgagGATGCATATGGTTAAACATGAGGGAGAGAGAAAGTTCAGCTGTGATGTGTGCGGGAAGGCGTTCTTGAGACGAAGCAATCTTAGTTCCCACATGGATATGCATAAGAAATATGGGCATGTCCAGATATAG
- Protein Sequence
- MYLEQFKLIDLSCPVCQEHFTEMIFLTTHVRNMHSTNFFQCERCSEVFNKKRELRLHQKLLHPEEYVYETQKYCVKEEPGISNVKVKANDFDHSEKRRKAKLRRENIACILNTSTATPFKYYMNRFRCFYCSKNHTEFEPIRDHIASKHSYCDPSGKAMKAVKGKDAIVKLDISSLTCKLCCMSVDDLDALSDHLISNHKTKYDKSMISIVQPFKIAKDNMACPICPNVVFRYFVKLLEHMNDSHSNNNVICVYCGQTFRNTPSYRGHLSRYHRTSACKCSECDLEFSNLAKLTAHKANAHGAKAFKCSKCNEKFSTIYLRQKHLMDAHDSGHKCTYCNRLFARNSYMKNHIRRLHLKEKNVECSVCKEKFFDKTRLNIHMVKHIGERNYHCDICGKTFLWKKNLRDEIGLKNVKSANYRKRRNLQILFNNTSLIPFKWRQKYLCFYCGDDLADYDLLKKHTRAHGACSLTDRALRRVSGTDIEIKIDVSETVCEICDEELPTFDNLINHLMCKHNLPYDKNSDLIIMKYRLVDLKCLLCEDSFNHFSKLIVHANTSHPMKFLSCDVCHQKFNKQRDLTAHFRSYHKKEGYNCAQCAISFPTNWALSNHKFKSHSSVCNICFKSFASSDKRLKHMKVEHVDDEYLQCGFCLKIMNTKQGFLRHATNCTSMSDDLKAQHIIDEVVSIDDIEKKPNVKQIRNNLACILNMTTAIPFKHFMNKFRCFYCTKHFTECDDLKEHTITQHPHCDSKLKAMRLRNREDISIKIDTSSLSCKICFESLNDLEHLIDHITSEHKTRYDKSVDVNVQPYKLVKDNFPCPFCGEVFRYFSTLLRHVSGAHTDNKNICMYCGKSFRTKPNLRAHITRRHRVEKAYKCMTCKIEFARNIDLRTHMGRAHGNKMIDCTECPEKFVSQYSMQRHLITAHGSGHKCTYCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCNERFFDMALLKMHMVKHIGERNFHYEYPHHPYDGCTSQRRRKNLQILFNNTSVMPFKWRGTYLCFYCGKSYTEYPEFKKHTKAHGLCSTNDYSLKIIKGSHIEIKIDVSDVVCEICCEPFASFHDVVQHLNSKHNLKYDTEIDIPFQQYRLADFRCLLCHEQFTYFGYLVKHVNNVHPQNCFICDDCGLTFNKKRDMALHVRDNHRQGGYSCDQCKGVFATKSILRKHQNTFHFRKCNDCSLTFASRSLLHKHVRLDHPDDGSLKCAYCTKELHSKQGLKQHLIKCELKMLSQIGSRNQNVFPEESYVEPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKYSCFYCSKKFIEFDELKEHTLREHPVCDVKSKCMKKCKGERISVKVDVACLACKICCQPIDDLDVLVDHLIVEHNANYDKSMKRCFEPFRIIKDNIPCPLCPDRTFRYFSTLLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGSCECDVCSLKFKNQWCLARHKAKTHNAKDYKCPKCPEQFQSQYHKQKHLITSHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFSCDVCGKAFLRRSNLSSHMDMHKKYGHVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010398; iTF_00022995; iTF_00325632;
- 90% Identity
- -
- 80% Identity
- -