Cros030154.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000048.1:3426711-3432091[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 40 0.06 4.8 8.8 0.2 2 23 2 24 1 24 0.95 2 40 4 3.2e+02 3.0 0.3 2 23 45 67 44 67 0.82 3 40 0.051 4.1 9.0 3.0 1 23 71 94 71 94 0.94 4 40 10 8e+02 1.8 0.1 3 23 254 276 253 276 0.91 5 40 0.01 0.8 11.2 0.2 2 23 282 304 281 304 0.94 6 40 0.0037 0.3 12.6 0.4 2 23 310 332 309 332 0.92 7 40 0.034 2.7 9.5 0.9 1 23 337 360 337 360 0.93 8 40 0.0025 0.2 13.1 3.5 1 23 364 387 364 387 0.97 9 40 0.0055 0.44 12.0 0.7 2 23 394 415 393 415 0.96 10 40 0.012 0.96 11.0 1.9 1 23 421 443 421 443 0.97 11 40 0.0083 0.67 11.5 0.2 1 23 490 512 490 512 0.95 12 40 0.15 12 7.5 0.4 3 23 541 562 539 562 0.90 13 40 0.047 3.7 9.1 0.8 2 23 583 605 582 605 0.94 14 40 0.0032 0.25 12.8 4.3 2 23 611 633 610 633 0.96 15 40 0.066 5.3 8.6 0.6 1 23 638 661 638 661 0.94 16 40 0.00094 0.075 14.5 1.4 3 23 665 686 663 686 0.95 17 40 0.011 0.88 11.1 5.0 1 23 768 791 768 791 0.96 18 40 0.038 3 9.4 0.5 2 23 819 841 818 841 0.94 19 40 0.0013 0.1 14.0 0.1 1 23 863 886 863 886 0.91 20 40 3.2e-06 0.00026 22.2 0.5 3 23 893 914 891 914 0.95 21 40 0.00024 0.019 16.3 1.0 1 23 920 943 920 943 0.96 22 40 0.00023 0.019 16.4 0.0 3 23 950 971 949 971 0.97 23 40 0.00039 0.031 15.7 4.3 1 23 975 998 975 998 0.97 24 40 0.0011 0.087 14.2 0.4 2 23 1005 1026 1004 1026 0.97 25 40 2.6 2.1e+02 3.6 1.1 1 10 1032 1041 1032 1045 0.95 26 40 0.0099 0.79 11.2 1.5 1 23 1086 1108 1086 1108 0.95 27 40 8.6 6.9e+02 2.0 0.2 2 23 1136 1158 1135 1158 0.94 28 40 0.0084 0.67 11.5 0.6 1 23 1178 1201 1178 1201 0.96 29 40 0.00037 0.03 15.7 0.2 1 23 1206 1229 1206 1229 0.94 30 40 0.0068 0.54 11.8 1.2 1 23 1234 1257 1234 1257 0.96 31 40 0.00024 0.02 16.3 0.7 2 23 1260 1282 1259 1282 0.95 32 40 1.2 95 4.7 1.9 2 20 1289 1307 1288 1309 0.93 33 40 0.0038 0.3 12.6 1.6 1 23 1366 1389 1366 1389 0.97 34 40 0.024 1.9 10.0 0.1 2 23 1462 1485 1461 1485 0.92 35 40 0.00016 0.013 16.8 0.3 3 23 1492 1513 1491 1513 0.94 36 40 0.0048 0.38 12.2 3.5 2 23 1518 1540 1517 1540 0.93 37 40 0.0013 0.1 14.0 3.4 1 23 1545 1568 1545 1568 0.98 38 40 1.3e-05 0.001 20.3 5.0 1 23 1572 1595 1572 1595 0.97 39 40 0.00095 0.076 14.4 0.3 2 23 1602 1623 1601 1623 0.96 40 40 0.0016 0.13 13.7 1.6 1 23 1629 1651 1629 1651 0.97
Sequence Information
- Coding Sequence
- ATGTCCTGCCAATTATGCGATGATCGTTTCAAAACCCTAGACGCCTTGATCGACCATTTGGTCACGAAGCACGACTTAAAATACGACAGACAAGTCCAAATGTTAATAGAACAGTACAAATTGCTAGATCTCAGCTGCCCGCTGTGTGAAGAAAAATTTTCCGAAATGGCTTTCCTAAACTTCCACGTCAACAGCAGACATGCGGACAATTTCCAATGTGAATTTTGTTCCGAAATGTTCCAAAAGAAAAAAGATCTCAAGCTGCACAACAAATTGTTTCATACAGACCCTTACGATGATCAGATTGAAATATGCGTGAAAGAAGAGCCAGGTTTAAGCAATATTAAACTGAAAAGTTTGGATTTTGATGCGGCGGAAAGGAAAAGAATAGCAAAGCTGCGACGCGAAAACATCGCGTGCATTTTGAACATGTCCACTGCAATTCCTTTCAAATACTACATGAACCGCTTTCGTTGTTTCTATTGCACAAATAACCACACTGAATTTGAGCCAGTACGAACACACACCATCACCAAACACCCTTACTGTGATCCTTCAGGGAAAGCCATGAAGTCTATAAAAGGGAAAGACGCTATCGTCAAAATAGACATCTCCTCGTTAGCTTGCAAACTGTGCTGCATATCTATCTCCGACTTAGACGCCCTCTCCGACCATTTAATATCAAATCATAAAACTAAATACGACAAATCTATGATAAGTATAGTCCAACCTTTTAAAATAGCGAAAGACAATATGGCTTGTCCCCTCTGCCCTAACGTTGCATTTAGGTACTTTGTAAAGTTACTCGAGCATATGAATGAAAGTCATTCTAATAACAATGTCGTCTGTGTATATTGCGGTCAAACTTTTAGAAATACGCCGTCCTACCGGGGACATTTAGCAAGGTATCACAGGGGTAGCGAGTGCAAATGTCCAGACTGCGATTCAACTTTTCCTAATATTGCCAAGTTGACAGCTCACAGGGCTAACGTGCATGGTACGAAGACTTTTAAATGTTCCAAATGCAGTGAGAAATTCGCTACGGTTTATTTACGACAGAAACATTTGATAGATGCTCACGGATCGGGCCACAAATGCTCGTTTTGCGATAGGCTGTTCGCGCGGAACTCTTACATGAAGGACCACGTCCGAAGATTACACTTGAAAGAGAAGAACGTAGAATGCTCCGTGTGCAAAGAAAGGTTCTTTGATAAAACCAGATTAAACATTCACATGGTGAAACATATAGGGGAGCGGAACTACCACTGCGATATTTGTGGGAAAACATTTCTGTGGAAGAAAAATTTGAGGGGGCACATGTCTTCGCATAAACGGAACGCAAAAGTAAATTTCTTTTCAGATGAAATTGGGCTGAAAAACGTGAAAAGCACCAATTATCGCAAGAGGAGAAATCTGCAAATAATATTCAACAACACCTCGATGATACCGTTCAAATGGCGGCAAAAAtatctttgtttttattgtggcGAGGACGTGGCGGATTATGATATGTTGAGGAAACACACGCGGGCGCATGGAGCTTGCTCGCTTACAGACCGAGCGCTCAGTCGCGTCTCTGGCACCGACATAGAAATCAAAATAGACGTCTCTGACACTATATGCGAAATATGCGACGAACAATCTACCAACTTCGACGACTTAATCACTCACTTAGTCCATAAGCATAACTTACCGTACGACAAACACTCAGACCTTATTATAATGAAGTATCACTTAGCTGACCTCAAATGTTTACTCTGCGAAGAGAGTTTTAACCATTTCGGAAAATTAATCGTCCATGTTAACAACAGCCATCCCATGAAATTTCTTTCATGCGATGTCTGCCATCAGAAATTCAATAAGCACAGGGACTTGACAGCTCACCTTAGGTCTTACCACAAAAAAGAAGGCTACAATTGCACCCAATGCGCTGTTAGCTTCCCCACCAACTGGGCCCTTAGCAATCACAAATTTAAAACGCACTCCTCCATTTGTAATATTTGCTTCAAAAGTTTCTCTTCTTCAGACAAGAGACTGAAACATATGAAGTTAGAACATATAGTTGATGAGTTTTTGCAGTGCGGGTTTTGTCTTAAAACCATGAACACTAAACAAGGTTTCTTACGGCACGCCGCGCACTGCACTAACATGTCTGACGACTCTAAGACGCAACGTATCGTTGATGAAGTCGTCTCCATAGATGATACGGAAAGAAAGCCTAACGTTAAACAAATTAGGAATAACATCGCTTGCATACTCAACATGTCCACCGCTATACCGTTTAAACATTTCATGAACAAATTTAGATGCTTCTATTGCACTAAACATTTTACAGAATGCGACGACCTTAAAGAACATACTATCATTGAACATCCCCACTGCGACTCCAAGTTTAAATCCATGAGATTACGAAATAGGGAAGATATTTCTATTAAAATAGACACTTCCACGTTGTCTTGTAAAATTTGCTTTGAAACATTGAATGATTTGGATCATCTCATAGATCATTTAACCTCTGAACATAAGACGCGCTACGATAAATCAGTAGAAATAAACGTCCAACCATACAAATTGATCAAAGATAACTTCGCTTGCCCTTTTTGTGGAGAAGTCTATAGGTATTTTAGCACTTTGTTGAGGCATGTGAGCGGCGCTCACACTGACAACAAAACGATATGCATGTATTGCGGAAAATCCTTTAGGACGAAACCGAATTTAAGAGCGCACATTGCGCGTCGACACAAGGTAGGAAAGGTATACAAATGCGTGACTTGCAAATATGAATTCACGAGGAATATAGATCTGCGCACACACATGGGCAGAGTTCATGGCAACAAAATGGTAGACTGTCCCGAATGTCCGGAAAAGTTTATATCGCAGTACGCGATGCAGAGGCACCTCATAACGGCCCACGCGTCCGGCCACAAGTGCTCGTATTGCGGCAAGCTTTTCACGAGGAACTCCTTCATGGATAACCACATTAGACGGACacatttaaaagagaaaaaCGTTCAATGCTCGCTGTGCAACGAGAGATTTTTCGATTCGGCCCTCCTCAAAATGCATATGGTCAAGCATATAGGGGAGCGCAACTTCCACTGTGACGTTTGCGGCAAGAAATTTCTATGGAAGAAAAATCTAAGGGATGAATATGCGCACCGCCCGTACGACAGCTGTACCTCTCAGCGGCGGAggaaaaatttgcaaatattgTTCAATAACACCTCGGTCATGCCATTCAAATGGCGGGGCACGTACCTATGTTTCTACTGCGGCAAAAACTATACTGAGTACCCCGAGTTCAGAAAGCACACTAAAGCTCACGGCCTCTGCTCCACCAACGACTATTCCCTGAAGATAATCAAAGGGAATCACATAGAAATAAAAGTTGACGTCTCTGACATCGTTTGCGAGATATGCTGCGAGGCTTTCGGCAGATTCGACGAAATCGTGGACCATCTGAACATGAAACACGATCTCCGATACGACTCTAGCATAGATATCCCTTTCCAGTTATACAGGCTAGCAGACTTCCGGTGCTTGTTATGTGACGAACAATTTACTTACTTTGGATATCTAGTAAAACACGTGAATAACGTTCACCCGCAGAATTGCTTCATTTGCGACGACTGTGGGCTgacgtttaataaaaaaagggaCCTCGCTCTCCACGCGAGAGACAATCATCGCCAGGGAGGATATTCTTGCGATCAATGCGCAGCTAACTACAAAACCAGGGGCATGCTAAAGAAACATCAGAACAATTACCATTTGAAGAAATGTCAGGACTGCTCTTTAACTTTCTCGTCCTATGGCCTTCTGCAGAAACATATCCAATTAGACCATCCTGATAATGGTAGCTTAAAGTGTACTTATTGCGCAAAAGAATTGCATTCGAAACATGGCTTGAGGCAACACGTGTATAAATGCGAAGTAAGAATACTTACGCAGCTAGAAGCTCCGCGAACCAACATAGCTTTTCCAGACGATTCTTATGTGGAGCCCAAAAAGAAACAGAACATCTTGCAAATCCGACAAAACATTCAATGTGTGCTCAACATGTCCACCGCTATGCCGTTCAAATTCTTctcaaaatactcttgtttttaCTGTTCGAAAAAGTTCGTCGAATTCGACGATCTAAAAGACCACACTTTGCGAGAGCATCCTGTATGTGACGTAaagtcaaaatgtatgaaaaaattaaagggAGAAAGAATTAGCGTCAAAGTCGACGTTGCGTCCCTCGCTTGCAAAATGTGTTGCCAACCAGCGGATGACCTAGACTCTTTGATAGACCATCTCATAACAGACCACAAGGCTGATTACGACAAAACCATGAAACGCTGCTTTGAACCATTCCGATTAATAAAAGACAATATACCGTGTCCTATATGCGCTGATCGATCATTCCGTTACTTCAGCACTCTTCTCAGGCACATCAATTCCGAACACAGCGACAACAACAGAATATGCGATTTCTGTGGCCGCAGCTTCAAAAACGTAAATAACCTCAAAGTTCACATCACCTACGCTCACACCGGCTCTTGCGAATGCGATGTCTGCGGACTCAAGTTCAAAAACCAATGGTGTTTAGCGCGGCATAAAGCCAAAAGCCACAATGCTAAAGACTACAAATGCCCCAAGTGCCCAGAGCAATTCCAATCTCAGTATCACAAACAGAAACACTTAATAACCACCCACGATATAGGCCACAAGTGTAGTTACTGCGGGAAAATGTTCACTAGGAACTCTTTCATGAAAGACCATATACGGCGGACGCATTTGAAAGAGAAAAACGTGCCTTGCTCCGTGTGCAATGAGAAGTTTTTCGACAACTATCTCCTTCGCTTGCATATGGTTAAGCATGAGGGAGAGAGGAAGTTCAGTTGTGAAGTCTGCGGTAAGGCATTTTTGCGACGCAGCAACCTCAATTGCCACATGGAtatgcataaaaaatatggaCATGTTCAAGTATAG
- Protein Sequence
- MSCQLCDDRFKTLDALIDHLVTKHDLKYDRQVQMLIEQYKLLDLSCPLCEEKFSEMAFLNFHVNSRHADNFQCEFCSEMFQKKKDLKLHNKLFHTDPYDDQIEICVKEEPGLSNIKLKSLDFDAAERKRIAKLRRENIACILNMSTAIPFKYYMNRFRCFYCTNNHTEFEPVRTHTITKHPYCDPSGKAMKSIKGKDAIVKIDISSLACKLCCISISDLDALSDHLISNHKTKYDKSMISIVQPFKIAKDNMACPLCPNVAFRYFVKLLEHMNESHSNNNVVCVYCGQTFRNTPSYRGHLARYHRGSECKCPDCDSTFPNIAKLTAHRANVHGTKTFKCSKCSEKFATVYLRQKHLIDAHGSGHKCSFCDRLFARNSYMKDHVRRLHLKEKNVECSVCKERFFDKTRLNIHMVKHIGERNYHCDICGKTFLWKKNLRGHMSSHKRNAKVNFFSDEIGLKNVKSTNYRKRRNLQIIFNNTSMIPFKWRQKYLCFYCGEDVADYDMLRKHTRAHGACSLTDRALSRVSGTDIEIKIDVSDTICEICDEQSTNFDDLITHLVHKHNLPYDKHSDLIIMKYHLADLKCLLCEESFNHFGKLIVHVNNSHPMKFLSCDVCHQKFNKHRDLTAHLRSYHKKEGYNCTQCAVSFPTNWALSNHKFKTHSSICNICFKSFSSSDKRLKHMKLEHIVDEFLQCGFCLKTMNTKQGFLRHAAHCTNMSDDSKTQRIVDEVVSIDDTERKPNVKQIRNNIACILNMSTAIPFKHFMNKFRCFYCTKHFTECDDLKEHTIIEHPHCDSKFKSMRLRNREDISIKIDTSTLSCKICFETLNDLDHLIDHLTSEHKTRYDKSVEINVQPYKLIKDNFACPFCGEVYRYFSTLLRHVSGAHTDNKTICMYCGKSFRTKPNLRAHIARRHKVGKVYKCVTCKYEFTRNIDLRTHMGRVHGNKMVDCPECPEKFISQYAMQRHLITAHASGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCNERFFDSALLKMHMVKHIGERNFHCDVCGKKFLWKKNLRDEYAHRPYDSCTSQRRRKNLQILFNNTSVMPFKWRGTYLCFYCGKNYTEYPEFRKHTKAHGLCSTNDYSLKIIKGNHIEIKVDVSDIVCEICCEAFGRFDEIVDHLNMKHDLRYDSSIDIPFQLYRLADFRCLLCDEQFTYFGYLVKHVNNVHPQNCFICDDCGLTFNKKRDLALHARDNHRQGGYSCDQCAANYKTRGMLKKHQNNYHLKKCQDCSLTFSSYGLLQKHIQLDHPDNGSLKCTYCAKELHSKHGLRQHVYKCEVRILTQLEAPRTNIAFPDDSYVEPKKKQNILQIRQNIQCVLNMSTAMPFKFFSKYSCFYCSKKFVEFDDLKDHTLREHPVCDVKSKCMKKLKGERISVKVDVASLACKMCCQPADDLDSLIDHLITDHKADYDKTMKRCFEPFRLIKDNIPCPICADRSFRYFSTLLRHINSEHSDNNRICDFCGRSFKNVNNLKVHITYAHTGSCECDVCGLKFKNQWCLARHKAKSHNAKDYKCPKCPEQFQSQYHKQKHLITTHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRLHMVKHEGERKFSCEVCGKAFLRRSNLNCHMDMHKKYGHVQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246111;
- 90% Identity
- -
- 80% Identity
- -