Pcas010907.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- lrrfip2
- Assembly
- GCA_038024825.1
- Location
- CP149051.1:12021691-12031313[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-76 5.5e-72 243.0 20.7 1 264 125 386 125 413 0.86 2 2 0.84 2e+04 -5.1 12.6 116 169 419 472 383 484 0.52
Sequence Information
- Coding Sequence
- ATGGGTCACCCATCAGAAGGCGCGACTCCTGACAATAGCGACGAGGAGAGCGGCGAAGCGTTCACCGATGGTGATTTCGGCGATTCCGACGATGAAATTAACTTAGATATTAGTGATGAATCAAAAACCTCCCCCATTCCAGTAAATGAAACTGTAAACACTGAAGTCATGGAGCTAGCAAACGGTAGTCGCAATGGCTTCGACGAACACGATCAGGCCAAATTGAACGGTTACAAAAACGGTGATATTGGACAGTCGAGTGATTTGGAATGTCGCAGCAATGGCGAGCATGCGATGTCAGACATCCGGAGAGATTCTCACGGCGATCAGAATCCATCCATCGTTGGCATTCTCGGTGGTCAACAGAATCATGCGGAGCAAAGActggcggcgcggcgcgcggcgcgggcggagGCGCGCGAGATCCGCATGCGGGAGCTCGAGCGGCAGCAGAGGGAGCAGGAGGACCATGCGGACAAAGCGTACGACATGTATGCAGAGACGGTGACGCGGCGCGGCGTCCCGCGGCTGGCGGCGCTCAGCCCGGCGACGCACACGCCGCGGCGCAGCTCCGAGGACTCCGACGACACCTTCAATGTCAAGGACCTTAGGCACGAGTTAAAAGAGGTAGAGGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGGCTCGAGGAGTTGCACGAGACTTATGCGCAATTACAGCGCGAGCACAAAGAGAAATGCTCATCGTTCGAGCGTTTAAAACGCGAGCACGCGTCGCTCGAGACGGAGCTGAGCGCCGCGCGGGACGCGGTGCGGGCGCGggacgccgccgccgcggaCGCGGGCTTCGCCTTCgtggaggcggcggcggcgcccgcGGCGACCGGCCCGGCCGACCGGCAGCCCCAGGGCTTCGGCAGCGTGCCGCCGCTGGCGCTCGTCTCGCACGAGAACGAGAAGCTGCTCAATGACGCCGGCGAAGGGACCTTAGacgTCCGGTTGCAAAAGTTGTTGAGCTGCAAGCAGTCGCTGGAGGGCGAGGTGCGCCAGCTGAAGCTGCAGCTGCACGAGGAGCGGCACAACGGAGTCGCCGAGCCGAGAGACCATGACCGGGAGACCGAGCTGGAGAGCCTGCGCAAGTCGTGCGCGGAGGCGAAggcgcgcgcggcgcgggcggagGCGGAGGCGGCGCTGCAGGCggccggcgcggcgcggctcgCGGCGCAGGTCTCGCGGCTCAAGGCCACGCAGGACGCCGCCGACGACCGCGAGGAGCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGAGAGAGgcCAGAGAAGCACTGAATCGAGTAGAAGAGCTGGAGACGGAAAATAGTCACCTCACGAAGCGTCTCGACAAATTGAAGAATGCAAAGTCGGCACTACTCAAGGACCTGTGA
- Protein Sequence
- MGHPSEGATPDNSDEESGEAFTDGDFGDSDDEINLDISDESKTSPIPVNETVNTEVMELANGSRNGFDEHDQAKLNGYKNGDIGQSSDLECRSNGEHAMSDIRRDSHGDQNPSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVTRRGVPRLAALSPATHTPRRSSEDSDDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRLEELHETYAQLQREHKEKCSSFERLKREHASLETELSAARDAVRARDAAAADAGFAFVEAAAAPAATGPADRQPQGFGSVPPLALVSHENEKLLNDAGEGTLDVRLQKLLSCKQSLEGEVRQLKLQLHEERHNGVAEPRDHDRETELESLRKSCAEAKARAARAEAEAALQAAGAARLAAQVSRLKATQDAADDREEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- -
- 80% Identity
- -