Pcas009785.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149050.1:10297695-10298192[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-13 3.1e-10 40.0 0.2 3 37 17 52 15 58 0.87
Sequence Information
- Coding Sequence
- ATGGTCAGAAAATACGAAAGAATGAGCGGACGTCAGTCATGGAACGAATCAGATATGGCCAGGGCCGTGGCTGCCGTAGTATCGGGCAAAATGGGCTACAAATTGGCTGCCAGGACCTTCCACATACCGCGATCCACTCTGCAGAGGCGTGCCAGCAAAATACGCTACCAGCAGCCAGACGATCCTAAACCTCTCATGGGGCATTACAGAAGGGTGTTCACGGAAAGCCAAGAAAAAGACTTAGTCGGCTACATAAAGAGCATGGAACAATACTTTATGGGCGTATCCCGCCGAGATATCAGAGAATTAGCATATCAATACGCAGTCGACAATAACCTCAACCATCCTTTCGATACCAACTCGAGAATGGCCGGTGAAGATTGGGTAAGGAACTTCTTGAAAAGAAATCCGGAGTTGATGCACAAACCGGAGAAAGATTATGAGCTTGAACCCGTGAACTTTGACCAGTTCTACCATTTCATGTGTCAGTTGTCATGA
- Protein Sequence
- MVRKYERMSGRQSWNESDMARAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKIRYQQPDDPKPLMGHYRRVFTESQEKDLVGYIKSMEQYFMGVSRRDIRELAYQYAVDNNLNHPFDTNSRMAGEDWVRNFLKRNPELMHKPEKDYELEPVNFDQFYHFMCQLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_00155233; iTF_01135688; iTF_00462319; iTF_00021265; iTF_00156180; iTF_01134715; iTF_00325310; iTF_00342142; iTF_00680449; iTF_00772805; iTF_00410215; iTF_01133648; iTF_00871223; iTF_00409208; iTF_00411353; iTF_00412446; iTF_00660234; iTF_00658285; iTF_00656020; iTF_00279052; iTF_01463183; iTF_00289553; iTF_01072373; iTF_00149306; iTF_00659386; iTF_00657069; iTF_01464090; iTF_00008828; iTF_00009929; iTF_00148412;
- 80% Identity
- -