Cros005654.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000009.1:5212943-5213440[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-13 2.3e-10 41.0 0.3 2 37 16 52 15 58 0.88
Sequence Information
- Coding Sequence
- ATGGTCAGAAAATACGAAAGAATGAGCGGCCGCCAGTCTTGGAACGAAGCCGATATGGCGAGGGCCGTTGCCGCCGTAGTGTCAGGGAAGATGGGGTACAAACTGGCTGCCAGGACCTTCCACATACCCCGCTCTACCTTGCAGCGACGGGCCAGCAAGATCAGGTACCAACAACCCGACGACCCTAAACCTTTGATGGGCCATTATAGAAGAGTATTTACAGAGAGCCAGGAAAAAGACTTGGTTGGCTACATAAAGAGTATGGAACAGTATTTCATGGGGGTATCTCGGCGGGACATACGGGAGTTAGCTTTTCAATATGCCGAAGACCACAGTTTGAATCATCCTTTCGACACAAACTCGAGGATGGCGGGAGAGGACTGGGTTAGGAACTTCCTCAAGAGAAATCCAGAGCTTTTGCATAAATCAGATAAGGAATTCGAACTGGAACCGGTAAACTTCGATCAGTTCTATCACTTCATGTGCCAACTGTCATGA
- Protein Sequence
- MVRKYERMSGRQSWNEADMARAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKIRYQQPDDPKPLMGHYRRVFTESQEKDLVGYIKSMEQYFMGVSRRDIRELAFQYAEDHSLNHPFDTNSRMAGEDWVRNFLKRNPELLHKSDKEFELEPVNFDQFYHFMCQLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_01245862;
- 80% Identity
- iTF_00462319;