Basic Information

Insect: Polyergus mexicanus
Gene Symbol: -
Assembly: GCA_030449975.1
Location: JAUDSZ010000005.1:12266420-12277854[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.9e-05 0.01 17.5 1.4 1 23 451 473 451 473 0.96

2 18 2.1e-05 0.0037 18.9 1.9 1 20 479 498 479 501 0.94

3 18 1.5e-05 0.0026 19.4 1.4 1 23 507 529 507 529 0.98

4 18 8.6e-05 0.015 17.0 4.4 1 21 535 555 535 557 0.95

5 18 1.2e-05 0.002 19.8 5.6 1 23 563 585 563 585 0.99

6 18 2.6e-05 0.0046 18.6 5.3 1 23 591 613 591 613 0.97

7 18 0.0001 0.017 16.8 6.9 1 23 619 641 619 641 0.96

8 18 9.8e-08 1.7e-05 26.3 2.7 1 23 647 669 647 669 0.98

9 18 7.2e-05 0.013 17.3 6.7 1 23 675 697 675 697 0.97

10 18 2.2e-05 0.0039 18.9 5.8 1 23 703 725 703 725 0.98

11 18 4.7e-07 8.1e-05 24.1 2.8 1 23 731 753 731 753 0.98

12 18 8.9e-06 0.0016 20.1 7.8 1 23 759 781 759 781 0.98

13 18 2.8e-05 0.0049 18.5 9.1 1 23 787 809 787 809 0.98

14 18 3.7e-05 0.0064 18.2 7.5 1 23 815 837 815 837 0.98

15 18 0.0018 0.31 12.9 8.8 1 21 843 863 843 865 0.94

16 18 1.3e-05 0.0023 19.6 0.4 1 23 871 893 871 893 0.98

17 18 0.032 5.6 8.9 4.5 1 23 903 925 903 925 0.98

18 18 5.2e-07 9.1e-05 24.0 1.3 1 23 931 953 931 953 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.9e-05	0.01	17.5	1.4	1	23	451	473	451	473	0.96
2	18	2.1e-05	0.0037	18.9	1.9	1	20	479	498	479	501	0.94
3	18	1.5e-05	0.0026	19.4	1.4	1	23	507	529	507	529	0.98
4	18	8.6e-05	0.015	17.0	4.4	1	21	535	555	535	557	0.95
5	18	1.2e-05	0.002	19.8	5.6	1	23	563	585	563	585	0.99
6	18	2.6e-05	0.0046	18.6	5.3	1	23	591	613	591	613	0.97
7	18	0.0001	0.017	16.8	6.9	1	23	619	641	619	641	0.96
8	18	9.8e-08	1.7e-05	26.3	2.7	1	23	647	669	647	669	0.98
9	18	7.2e-05	0.013	17.3	6.7	1	23	675	697	675	697	0.97
10	18	2.2e-05	0.0039	18.9	5.8	1	23	703	725	703	725	0.98
11	18	4.7e-07	8.1e-05	24.1	2.8	1	23	731	753	731	753	0.98
12	18	8.9e-06	0.0016	20.1	7.8	1	23	759	781	759	781	0.98
13	18	2.8e-05	0.0049	18.5	9.1	1	23	787	809	787	809	0.98
14	18	3.7e-05	0.0064	18.2	7.5	1	23	815	837	815	837	0.98
15	18	0.0018	0.31	12.9	8.8	1	21	843	863	843	865	0.94
16	18	1.3e-05	0.0023	19.6	0.4	1	23	871	893	871	893	0.98
17	18	0.032	5.6	8.9	4.5	1	23	903	925	903	925	0.98
18	18	5.2e-07	9.1e-05	24.0	1.3	1	23	931	953	931	953	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCATCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACCCCCCATTCATCCACGGACCTGCGTACTGTAGGTTCTGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCAATTTTCACGGATTGCTTCCTGGAACGCTACCTCAGGTCTCGGTCTATCATCCCCCCCACAACTCCTCGCATAGGAGTGGTGGCAGTGGGGAGGCATCATCCTCCAAAGAGTCAGCTTCTTCATTGAATCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAACAACAATCTACAGCCGcgcatcatcatcatcagcCATCGGTTAACAGCAGCAGTCACCACAGTTCTCTGCAATCGAATCCGCAGATTCCCGTATCTCTTCCCGGCCTTAATTTAGACGGCGCGCATATACCGGCGAGCGTAAGTCATCTGCAGGCTGCACATGCACAAATGCAGCAGCAAATGCAGGCACAAGCACAGCAGCAGCTGCatcagcagcagcaacagcagcaagCGCAGCCGtcgcagcagcagcagcagcaacaatcCCATCACCAGATACCAAATCATCAGAACGCCCAGAACAACGGACCGACAGGGCACAGCCAAAACGCACAGCGAGACGACAACAAAGTCAAGGACGAGGGTGGTAGCTGCACCACCGAGCGTTGCAGCGATAATCAGGTTCACTGTCAAGTTCAATGCGATCTGCAATTACAACCACCGCAAGATCTTCAACAGAGCTTGATGCAACAGCAGCAGTCGCAGATTGGGGTCAACATCAGCGGAAATTCCACCACCGAAGGGGGAAGTCAAAACAATTCTGAAAAGCccgagaaagaaaaggaattgCGGCAACTGAATATGACTCAATTCCAAGTCCCTGACTTAAAGCCAGGTGGACACATGATGGATGTGAGAACAGCGGACGGATCGGTTGTGAAAATTAGCGCGGGTAACGAGCAGGATTTGGCGAAAACTCTCGGCGTCGAAATGGTACAAAATATGTACAAGGTGAACGTTGAAGATATTAATCAACTCCTGGCTTATCACGAAGTCTTTGGCAAGCTACAAAGCGAAATTGCGGCTGGAACGACTCTAGTGGGTAGCACTGTTCCTACGCAGACAGTTACCACGATACAGAATGGTACTCCAATCGTGCAACAGGTTCCACTGAACAAATTTGACATAAAGTCAAGTGACGGCGAGGCGACTCCCGGTCCGAGCGCGTCACCCGTATCGGTTGGCAGTCACGCTTGCGAGATATGCGGAAAGATCTTTCAATTTCGTTATCAGCTCATCGTGCATCGCAGATATCATACCGAGAGAAAGCCGTTTACGTGTCAGGTATGCGGTAAAGCATTCTCAAACGCGAATGATTTGACGCGTCACGGCAAGTGCCATTTGGGTGGATCCATGTTCACTTGCACAGTCTGCTTTCATGTCTTTGCGAATGCACCTTCGCTGGAACGCCATATGAAAAGACACGCTACCGACAAACCGTACAATTGTACAGTGTGTGGTAAGAGCTTTGCGCGCAAAGAGCATTTGGATAACCATACGAGATGTCACACCGGCGAGACACCGTACAGATGCCAATACTGTTCGAAGACATTTACCCGAAAAGAACACATGGTAAATCATGTTCGCAAACACACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCACACAGGAGAAACCCCTCATCATTGCCAAGCCTGCGGCAAGAAGTATACACGTAAAGAACATCTCGCTAACCATATGCGCTCGCACACGAACGACACTCCGTTCCGTTGTGAAATATGCGGTAAGTCGTTTACGAGGAAGGAGCATTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTCTGCCAGAGAACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCCTCACATTGTTGCAACGTGTGCTCCAAACCATTCACAAGAAAGGAACATCTTGTGAATCATATGCGTTGCCATACCGGTGAACGTCCATTTGTGTGCACAGAATGTGGCAAGAGTTTCCCATTGAAGGGCAATCTACTCTTCCATATGCGCTCGCACAACAAGGGCAGCAATGCCGAGAGGCCGTTCCGCTGCGATCTGTGTCCCAAAGATTTTATGTGCAAAGGACACTTGGTCTCACACCGGCGCTCGCACTCGGACGAGCGGCCGCACAGTTGCCCGGACTGCGGCAAGACCTTCGTCGAGAAGGGCAATATGCTGCGACACTTGCGCAAGCACGCGGCCGAAGGACCGCCGACGCAAGTTAGCACGCCGTCAGCGATACCGCAAACCGGTGTTTTGCCGATACCGGCAGCAGCAGCAGTCCTGGTTGGACACCCATTGGCGCCACCGGCGCCCCCCGTCGTCCCGCAACATACGGTGGTCGTGCCGACCCCGCCCGGCGTACTGGCGTCGTATTAG
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSTPHSSTDLRTVGSAVALASSVAKYWVLNFHGLLPGTLPQVSVYHPPHNSSHRSGGSGEASSSKESASSLNQEMALTSSSHHQQQSTAAHHHHQPSVNSSSHHSSLQSNPQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAQAQQQLHQQQQQQQAQPSQQQQQQQSHHQIPNHQNAQNNGPTGHSQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQSQIGVNISGNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVPLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQTGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00014883; iTF_00730222; iTF_00730939; iTF_00729503; iTF_00265172; iTF_01077652; iTF_00292408; iTF_00109978; iTF_00867614; iTF_00869049; iTF_01254974;
90% Identity: iTF_00899003;
80% Identity: -