Basic Information

Insect: Prenolepis imparis
Gene Symbol: -
Assembly: GCA_030444845.1
Location: JAUDTA010000003.1:22731334-22742662[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.8e-05 0.011 17.5 1.4 1 23 446 468 446 468 0.96

2 18 2.1e-05 0.004 18.9 1.9 1 20 474 493 474 496 0.94

3 18 1.4e-05 0.0028 19.4 1.4 1 23 502 524 502 524 0.98

4 18 8.3e-05 0.016 17.0 4.4 1 21 530 550 530 552 0.95

5 18 1.1e-05 0.0022 19.8 5.6 1 23 558 580 558 580 0.99

6 18 2.6e-05 0.005 18.6 5.3 1 23 586 608 586 608 0.97

7 18 9.7e-05 0.019 16.8 6.9 1 23 614 636 614 636 0.96

8 18 9.5e-08 1.9e-05 26.3 2.7 1 23 642 664 642 664 0.98

9 18 7e-05 0.014 17.3 6.7 1 23 670 692 670 692 0.97

10 18 2.2e-05 0.0043 18.9 5.8 1 23 698 720 698 720 0.98

11 18 4.5e-07 8.9e-05 24.2 2.8 1 23 726 748 726 748 0.98

12 18 8.6e-06 0.0017 20.1 7.8 1 23 754 776 754 776 0.98

13 18 2.7e-05 0.0053 18.6 9.1 1 23 782 804 782 804 0.98

14 18 3.6e-05 0.007 18.2 7.5 1 23 810 832 810 832 0.98

15 18 0.0017 0.34 12.9 8.8 1 21 838 858 838 860 0.94

16 18 1.3e-05 0.0026 19.6 0.4 1 23 866 888 866 888 0.98

17 18 0.031 6.1 8.9 4.5 1 23 898 920 898 920 0.98

18 18 5e-07 9.9e-05 24.0 1.3 1 23 926 948 926 948 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.8e-05	0.011	17.5	1.4	1	23	446	468	446	468	0.96
2	18	2.1e-05	0.004	18.9	1.9	1	20	474	493	474	496	0.94
3	18	1.4e-05	0.0028	19.4	1.4	1	23	502	524	502	524	0.98
4	18	8.3e-05	0.016	17.0	4.4	1	21	530	550	530	552	0.95
5	18	1.1e-05	0.0022	19.8	5.6	1	23	558	580	558	580	0.99
6	18	2.6e-05	0.005	18.6	5.3	1	23	586	608	586	608	0.97
7	18	9.7e-05	0.019	16.8	6.9	1	23	614	636	614	636	0.96
8	18	9.5e-08	1.9e-05	26.3	2.7	1	23	642	664	642	664	0.98
9	18	7e-05	0.014	17.3	6.7	1	23	670	692	670	692	0.97
10	18	2.2e-05	0.0043	18.9	5.8	1	23	698	720	698	720	0.98
11	18	4.5e-07	8.9e-05	24.2	2.8	1	23	726	748	726	748	0.98
12	18	8.6e-06	0.0017	20.1	7.8	1	23	754	776	754	776	0.98
13	18	2.7e-05	0.0053	18.6	9.1	1	23	782	804	782	804	0.98
14	18	3.6e-05	0.007	18.2	7.5	1	23	810	832	810	832	0.98
15	18	0.0017	0.34	12.9	8.8	1	21	838	858	838	860	0.94
16	18	1.3e-05	0.0026	19.6	0.4	1	23	866	888	866	888	0.98
17	18	0.031	6.1	8.9	4.5	1	23	898	920	898	920	0.98
18	18	5e-07	9.9e-05	24.0	1.3	1	23	926	948	926	948	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATATAAATGCGGGTCAAAGTGGTCGTCCATCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACCCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCAATCTTCACGGATTGCTTCCTGGAACGCTACCTCAGGTCTCGGTCTATCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCGGTGGGGAGGCGTCATCCTCCAAAGAGTCAGCCTCTTCACTGAATCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAACAACAATCTACAGCCGcgcatcatcatcatcagccATCGGTTAGCAGCAGCAGCCACCACAGTTCTCTGCAATCGAATCCGCAGATTCCTGTATCTCTTCCCGGCCTTAATTTAGACGGCGCGCATATACCGACGAGCGTTAGTCACCTGCAGGCTGCGCACGCACAAATGCAACAACAAATGCAGGCACAAGCACAGCAGCAGCTGCaccagcagcagcaacagcagcaagCACAGGCGTCGCAGCAGCAACAATCCCATCATCAGATGCCAAATCATCAGAACGCCCAGAACAACGGACCGACAGGACACAACCAAAGCGCTCAGCGAGACGACAACAAAGTCAAGGACGAGGGCGGTAGCTGCACCACCGAGCGCTGCAGCGACAATCAGGTTCACTGTCAAGTTCAATGCGATCTGCAATTACAACCACCGCAAGATCTTCAACAGAGCTTGATGCAGCAGCAGTCGCAGATCGGGGTCAACATCAGCGGGAATTCCACTACCGAAGGAGGAAGTCAGAACAATTCTGAGAAACCcgagaaagaaaaggaatTGCGGCAGCTGAATATGACTCAATTCCAAGTCCCTGACTTGAAGCCAGGAGGACACATGATGGATGTGAGAACGGCGGACGGATCGGTTGTGAAAATCAGCGCGGGAAACGAGCAGGATTTGGCGAAAACTCTCGGCGTCGAAATGGTACAAAATATGTACAAGGTGAACGTTGAAGATATTAACCAACTCCTAGCTTATCACGAAGTCTTTGGGAAGCTACAAAGCGAAATTGCGGCTGGAACGACTCTAGTGGGTAATACTGTTCCTACGCAGACAGTTACCACGATACAGAATGGTACTCCAATCGTACAACAGGTACCACTaaacaaatttgacataaaatcGAGTGACGGCGAGGCGACTCCTGGTCCAAGCGCGTCACCCGTGTCGGTTGGCAGTCACGCTTGCGAGATATGCGGAAAGATCTTTCAATTTCGTTATCAGCTCATCGTGCATCGCAGATATCATACCGAAAGGAAACCATTTACGTGTCAGGTATGCGGTAAAGCGTTCTCGAACGCAAATGATTTGACACGTCACGGCAAGTGTCATTTGGGTGGCTCCATGTTCACTTGCACAGTTTGCTTTCACGTTTTTGCGAATGCACCTTCGCTAGAACGTCATATGAAGAGACACGCCACTGACAAACCTTACAATTGTACAGTCTGTGGTAAGAGTTTTGCGCGCAAAGAGCATTTGGACAACCATACGAGATGTCACACCGGCGAGACACCATACAGATGCCAATATTGTTCGAAGACATTTACCCGAAAAGAACACATGGTAAATCACGTTCGCAAACACACTGGTGAAACTCCGCATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACCCCTCATCATTGCCAAGCCTGCGGCAAGAAGTATACACGTAAAGAGCATCTTGCTAATCACATGCGCTCGCACACGAATGACACGCCGTTCCGTTGTGAAATATGCGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTCTGCCAGAGGACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCTTCACACTGTTGCAACGTGTGCTCCAAACCATTCACAAGAAAGGAGCATCTCGTGAATCATATGCGTTGCCATACCGGTGAACGTCCATTTGTGTGCACAGAATGTGGCAAGAGTTTCCCGCTGAAGGGCAATCTTCTCTTCCATATGCGCTCCCACAACAAGGGCAGCAACGCCGAGAGGCCGTTCCGCTGCGATCTGTGTCCCAAAGATTTCATGTGCAAAGGACACTTGGTCTCGCACCGGCGCTCGCACTCGGACGAGCGGCCGCATAGTTGCCCGGACTGCGGCAAGACCTTCGTCGAGAAGGGCAATATGCTGCGACACTTGCGCAAACACGCGGCCGAAGGACCGCCGACACAGGTTAGCACACCGTCGGTGATACCGCAAACCGGCGTTCTGCCGATACCGGCGGCTGCGGCAGTCCTGGTCGGACACCCGTTGGCCCCACCTGCGCCTCCCGTCGTCCCGCAACACACGGTAGTCGTGCCGACACCGCCCGGCGTACTAGCGTCGTATTAG
Protein Sequence: MNSEQHALPATTQAQQEDINAGQSGRPSYPGGLATATASLGNVGSTPHSSADLRVGTAVALASSVAKYWVLNLHGLLPGTLPQVSVYHSHHNSSHRSGGGGEASSSKESASSLNQEMALTSSSHHQQQSTAAHHHHQPSVSSSSHHSSLQSNPQIPVSLPGLNLDGAHIPTSVSHLQAAHAQMQQQMQAQAQQQLHQQQQQQQAQASQQQQSHHQMPNHQNAQNNGPTGHNQSAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQSQIGVNISGNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGNTVPTQTVTTIQNGTPIVQQVPLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSVIPQTGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01245368;
90% Identity: iTF_00899003;
80% Identity: -