Ccin006032.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephus cinctus
Gene Symbol
-
Assembly
GCA_000341935.1
Location
NW:3809-18565[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6.2e-05 0.0037 16.9 1.4 1 23 325 347 325 347 0.96
2 18 1.3e-05 0.00079 19.1 1.9 1 20 353 372 353 375 0.94
3 18 9.5e-06 0.00057 19.5 1.2 1 23 381 403 381 403 0.98
4 18 5e-05 0.003 17.2 4.4 1 21 409 429 409 431 0.95
5 18 1.5e-05 0.00093 18.8 4.6 1 23 437 459 437 459 0.99
6 18 1.5e-05 0.00093 18.8 5.3 1 23 465 487 465 487 0.97
7 18 5.9e-06 0.00036 20.2 7.1 1 23 493 515 493 515 0.97
8 18 5.7e-08 3.5e-06 26.5 2.7 1 23 521 543 521 543 0.98
9 18 4.2e-05 0.0026 17.5 6.7 1 23 549 571 549 571 0.97
10 18 1.3e-05 0.00079 19.1 5.8 1 23 577 599 577 599 0.98
11 18 3.5e-07 2.1e-05 24.0 2.9 1 23 605 627 605 627 0.98
12 18 5.2e-06 0.00031 20.3 7.8 1 23 633 655 633 655 0.98
13 18 1.6e-05 0.00099 18.8 9.1 1 23 661 683 661 683 0.98
14 18 2.1e-05 0.0013 18.4 7.5 1 23 689 711 689 711 0.98
15 18 0.001 0.062 13.1 8.8 1 21 717 737 717 739 0.94
16 18 7.9e-06 0.00047 19.8 0.4 1 23 745 767 745 767 0.98
17 18 0.019 1.1 9.1 4.5 1 23 777 799 777 799 0.98
18 18 3e-07 1.8e-05 24.2 1.3 1 23 805 827 805 827 0.97

Sequence Information

Coding Sequence
ATGGCGTTGACCTCGAATTCGCATCATCAGTCGACGACTtcgcatcatcatcatcaacaaGCTTCGATTAGCGGCGTCGGTCATCACGGCTCTCTGCAGTCCAATCAGCAGATTCCAGGCTCTCTTCCTGGCCTTAGCCTAGACGGGACGCACATTCCCGCAAGTGTCAGTCACTTGCAGGCGGCGCATGCTCAAATGCAGCAGCAGATGCAGtcgcaacagcaacagcagcagcagctgcaCCAGCAGCCGCAGCAACAGTCTCATCATCAGATGCAGCAGAGTCATCAGAACGCACAGAACAGTGGACCAAGCTCGCAGAGTCAGAACTCACAACGGgatgataataaagtaaagGACGAGGGTGGTAGTTGCACTACAGAACGGTGCAGCGATAATCAAGTCCATTGTCAGGTCCAGTGTGATCTTCAGCTACAGCCGCCACAGGATCTTCAGCAGAGTCTCatgcagcaacagcagcagcaacaaatTGGCGTCAACATTAGCGGCAGTTCCACTGCGGAAAGCGGAAGTCAGAACAATTCAGAGAAGCccgagaaggagaaggaaatgCGTCAGCTGAACATGGCACAGTTTCAACTTCCTGACCTTAAACCTGGTGGTCATATGATGGACGTTAGAACAGCCGACGGCTCGGTCGTTAAAATAAGTGCCGGAAACGAACAAGATCTAGCAAAGACTCTTGGCGTAGAGATGGTACAAAATATGTACAAGGTAAATGTCGAGGATATCAATCAACTGTTGGCGTACCACGAGGTCTTCGGAAAGCTGCAAAGTGAGATAGCAGCTGGCACCACTCTCGTAGGTGGTACCGTACCGACGCAAACTGTCACCACCATACAGAATGGAACACCGATAGTACAGCAAGTTCAACTTAACAAGTTTGACATAAAGACAAGCGACGGCGAGGCCACGCCCGGACCAAGTGCCTCGCCCGTATCCGTTGGTAGCCATGCCTGCGAGGTCTGCGGCAAGATCTTCCAGTTTCGCTATCAGCTTATCGTGCATCGCAGATATCATACTGAAAGGAAGCCATTCACGTGCCAGGTCTGCGGAAAGGCATTCACCAATGCCAACGATCTAACTCGTCATGGTAAATGTCACCTGGGTGGATCCATGTTCACCTGTTCAGTCTGCTTCCACGTCTTCGCTAACGCGCCGTCCTTGGAGCGCCATATGAAGCGTCACGCTACCGACAAGCCCTACAATTGTACAGTGTGCGGAAAAAGTTTCGCTAGGAAGGAACATCTAGACAACCATACTCGCTGTCACACCGGCGAAACACCTTACAGGTGTCAGTATTGCGCCAAAACTTTCACACGCAAGGAGCACATGGTGAACCATGTTCGCAAGCATACTGGCGAGACTCCGCATCGCTGCGACATATGCAAGAAGAGCTTCACTCGCAAGGAACACTTCATGAATCATGTCATGTGGCACACTGGCGAGACTCCGCATCATTGCCAGGTCTGCGGGAAAAAATACACGCGCAAGGAGCACCTTGCCAATCATATGCGTTCCCATACCAACGACACGCCGTTCCGATGCGAGATTTGTGGTAAGTCGTTCACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTACTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGAAAGGACCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAGTCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACACGTAAGGAGCACTTGACGAATCACGTCAGAATCCACACCGGTGAATCGCCACATAGGTGTGAATTCTGTCAGAGGACGTTCACTCGGAAAGAACACCTCAATAATCATCTCCGTCAACATACCGGAGATTCGTCGCATTGTTGCAACGTGTGCTCGAAGCCGTTCACGAGAAAGGAACATCTCGTGAACCACATGCGATGTCACACTGGCGAACGTCCGTTTGTCTGCACCGAGTGCGGCAAGAGTTTCCCGCTCAAGGGAAATCTCCTATTCCACATGCGCTCCCACAACAAGGGAAGCAACGCGGAGAGACCGTTCCGCTGTGACCTTTGTCCCAAAGACTTCATGTGCAAGGGCCACCTGGTCTCGCACAGAAGATCCCACTCGGACGAGCGACCGCACAGCTGTCCGGACTGTGGCAAGACCTTCGTCGAGAAGGGCAACATGCTGAGACATCTGCGAAAGCACGCCGTCGAAGGACCGCCTACGCAGGTCAGCACGCCCTCGGCAATTCCTCAACCGGTTCTGCCGATTCCCGCTGCCGCGGTACTGGTTGGTCATCCTCTGGCTGCTCCGCAACCGCCTCCAGTTGTTCCTCAGCATACCGTCGTGGTTCCAACACCTCCTGGTGTCCTCACGTCGTACTAA
Protein Sequence
MALTSNSHHQSTTSHHHHQQASISGVGHHGSLQSNQQIPGSLPGLSLDGTHIPASVSHLQAAHAQMQQQMQSQQQQQQQLHQQPQQQSHHQMQQSHQNAQNSGPSSQSQNSQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQIGVNISGSSTAESGSQNNSEKPEKEKEMRQLNMAQFQLPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCSVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAVEGPPTQVSTPSAIPQPVLPIPAAAVLVGHPLAAPQPPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01245368;
90% Identity
iTF_00899003;
80% Identity
-