Basic Information

Insect: Polyergus mexicanus
Gene Symbol: -
Assembly: GCA_030449975.1
Location: JAUDSZ010000003.1:3920084-3925493[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.7e-12 2.8e-08 34.7 0.0 1 39 377 416 377 420 0.90

2 4 3.5e-12 1e-08 36.1 0.1 2 39 432 469 431 472 0.94

3 4 7.9e-19 2.3e-15 57.3 0.0 1 45 486 531 486 531 0.97

4 4 1.4e-18 4.2e-15 56.5 0.1 1 42 538 580 538 581 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.7e-12	2.8e-08	34.7	0.0	1	39	377	416	377	420	0.90
2	4	3.5e-12	1e-08	36.1	0.1	2	39	432	469	431	472	0.94
3	4	7.9e-19	2.3e-15	57.3	0.0	1	45	486	531	486	531	0.97
4	4	1.4e-18	4.2e-15	56.5	0.1	1	42	538	580	538	581	0.97

Sequence Information

Coding Sequence: ATGAACGGACGATGCCTCCTCCGCCGTCGACATGAAATTGCACCGCCGCCGAGCGGAACGAGATGCCGGGAACGACGAGCTCGCGCCAGAAATATGCAAATCCAATCGGACCGGACCCGCGTGGTCCTCCGTCCGCCTCTCGCAAAGCGGTTTACCGAAATgagtatttttctatttcgcCCCGGCGCCCTGATCCCCGAACGCGACCTTTCCGCATGCGTTTACCCGCACGGCCGATCCGATTATCCGATCGcgataattaatgaattaattaaacgtATGCGCCGCTTTATCCAGTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCCTCAGCTCGCCGCCGAGGGAATCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCATCATCAACGGTACAAGCGACCCAGAATCGAGCGGCCCACGTTCGAGCCGCGCGCCACCGATCCAAGACACTACGAGCGCTACAAAGAGGAAGAGGCGATTACAATCAACGATTATAGCCGCGATAACAAAGAGAACCATCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCACTGGAAACTTGCCAACGTaataacaacaacaacaacggTAACGGGGCGAGTAACAACAACAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCACCATCCTGATCCCGGGGAGGTCGATTTACCCCCCGAAACCCAACCCACTCCACCCAGCGCCACCTTAGTCGGCACTACCATCACCCATCTAAGGGATCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGAGATCAAGATCAAGTTCGAAACGTTGCACACGATGGACTCTTCGGACACGATCGACATAGACAGCCATATGTCAGATCGGGCTAGCGTGAGCTCGAAAAATGCTGCTGACAGCGACAACATGATGATGATAACCCCAGAGCTGCTTGGACTGATGCCGTCGGGAAGCTCCGGCCAATCGGACTCAGGCGACAACAATTCGAGGGGGCACTCTGGACAGTCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGATGCGGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGGcAACGTTCAATATTCCCTCGACGACTCTGTGGCAACGAGCGCATCGACTGGGCATCGACACGCCCAAGAAGGATGGTCCCACGAAATCCTGGAGCGACGAAAGCTTAAACAACGCTTTAGAAGCTTTACGTACCGGCACTATTTCAGCTAATAAAGCGTCCAAAGCATTCGGCATACCTTCTAGCACGTTGTATAAGATCGCGAGGAGGGAAGGCATCAGGCTGGCCGCACCGTTCAATGCAAGTCCCACGACTTGGACGCCCGCCGATCTGGATCGCGCTTTGGAAGCGATAAGATCTGGCCAAACGTCCGTGCAGAGAGCGTCGACAGAATTCGGCATACCTACGGGAACATTGTACGGAAGATGTAAGCGGGAAGGAATCGAACTTAGCAGGAGCAATCCTACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAAGCTGTCAGATTAGGGCACATGAGCATCAATCAAGCAGCGATTCATTATAATCTGCCGTATTCGTCATTATACGGGCGTTTCAAGAGAGGCAAATACGAAGAACCCGTCGTCGGCGATATTTCGCAAGATGGCAGCAGTCCACACTTTCATCAGAGTCCCAATCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
Protein Sequence: MNGRCLLRRRHEIAPPPSGTRCRERRARARNMQIQSDRTRVVLRPPLAKRFTEMSIFLFRPGALIPERDLSACVYPHGRSDYPIAIINELIKRMRRFIQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRATDPRHYERYKEEEAITINDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFNIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_00729209;