Plab039984.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- -
- Assembly
- GCA_949318255.1
- Location
- OX439143.1:42149539-42150886[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-12 2.5e-08 35.4 12.8 2 68 54 123 53 125 0.87 2 2 0.00012 0.46 12.2 1.8 55 70 150 165 142 165 0.86
Sequence Information
- Coding Sequence
- atggcaaCAATGAATGAACAAAAGCCAGCCAATGTTGAGGTGGTCATAGACAAAAAGGCTCAAAAAGCAGGCGAAAAAATGTTAAGAGCCCAAAAAGAACAAGAGATTTACCACAACTTTGCAACGCCTTTAGTAGGCACCTTTTTGAATTTAACCCAAGAACCGGCCTTAATAAAATGTCCCAGTTGTGGCATAGAAGAACTAAGCGAAGTTGTGGATGAGTTAAAATGGTGGGCCACCGAAATTAATCGTTTTGTTGGATGTTTATTTGTGTCAttgtgttgttgctgttgtttggACTATTCCTTGCCCTGTAAGTCCAGTGATCGTAATcattattgtaaaaattgtgGCTGCTATTTTGGACGGGCCATGAGAATTCCGCCTttgaaaaaaagtcaaaatgcCAAAACAACAATGAAACGTTCAATTCTTCGTTGCTGCCTACGCCGCCATTATTGCTCCCAGTGTGGCGAATATTTGGGTTCTTATAGACGTCCTCAGTTGTAG
- Protein Sequence
- MATMNEQKPANVEVVIDKKAQKAGEKMLRAQKEQEIYHNFATPLVGTFLNLTQEPALIKCPSCGIEELSEVVDELKWWATEINRFVGCLFVSLCCCCCLDYSLPCKSSDRNHYCKNCGCYFGRAMRIPPLKKSQNAKTTMKRSILRCCLRRHYCSQCGEYLGSYRRPQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332011;
- 90% Identity
- -
- 80% Identity
- -