Plab029595.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia labialis
Gene Symbol
ZNF275
Assembly
GCA_949318255.1
Location
OX439142.1:1762695-1766091[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00046 0.064 15.2 0.2 2 23 190 211 189 211 0.95
2 15 0.0001 0.014 17.3 0.6 1 23 217 239 217 239 0.98
3 15 1.4e-06 0.00019 23.1 1.4 1 23 291 313 291 313 0.98
4 15 2.5e-05 0.0035 19.2 0.4 1 23 433 455 433 455 0.96
5 15 0.12 17 7.6 2.8 1 23 461 483 461 483 0.94
6 15 4.7e-06 0.00065 21.5 0.3 1 23 500 522 500 522 0.98
7 15 0.022 3.1 9.9 0.5 1 23 531 554 531 554 0.95
8 15 0.00076 0.11 14.5 4.9 1 23 560 582 560 582 0.98
9 15 0.00021 0.029 16.3 0.4 2 23 589 610 588 610 0.97
10 15 2.5e-08 3.5e-06 28.6 0.7 1 23 616 638 616 638 0.96
11 15 0.0021 0.29 13.1 1.3 1 23 644 666 644 666 0.98
12 15 4.6e-05 0.0064 18.4 1.6 1 23 672 694 672 694 0.96
13 15 3.9e-05 0.0053 18.6 3.2 1 23 700 722 700 722 0.99
14 15 2.5e-06 0.00034 22.4 0.7 1 23 728 750 728 750 0.99
15 15 5.9e-05 0.0082 18.0 0.4 1 23 756 778 756 778 0.97

Sequence Information

Coding Sequence
ATGTCGAGTAATTTAAACTCAAAATGCCGCACTTGCCTAAGTGATTCTAATATATATTATCAACTATACGATTATGTGGAAGACAACTTTAAAATCGTAGAAATGTTGGATGGAATAGTGCCCCAAATTGAAATTAAGACATCATCTCAATTTTCCACCGTAATGTGTCAGTCTTGTGTAGAGAAACTACTAACCGGCTATAAATTTCAACAACTGTGCATTGAAACCAATAATCGTTTGAATGATTTGTTGGGAATTGCGTTTTTTGATGCGGAGCCAAAATTAGAGAAGGTATTGGATCCCCTGACGGGTGAGTCAAGTATTAAATTGAAGCAGGAAGTTGAAGAAGATGCTTGTTTTGAACGTGAAATACGGTCTGATGAGCTGGAAAGAGGAATGAGATCAGATATTGATAATGACTGGGATCCTGGTGATAAGGGTGGAAGTGATACGGATTCGAgcaACGAAAAATTATCAGTTTTAAAGGAGAGATCTTTCAAAAAGGTACCTTtaagaattgatttttttgagaaaCCCCACAAACTAAGTCGTCAAAAGGATAATTTACCTTGTACAGAATGTGGTAAAATATTTAGTAGTATAAATCGGCTTAAGCAACATACAGCTATACATGATAAAAAGCGGGCTTATTCATGTGAAATTTGCAATAACAAATTTACGACTGACAAGTCTTTAAAGGCTCATATCGTAACTCATACGAACAATGGCAAAATTGCTAAGGATCAAAATAGCAGTATTGAAAAGAATGACTGTAAAAAGGTTATTAactcacaaaattttttgaatgtaCAATCAGCAAATTTAGAGGAAGCTGAAGATGCTTGTAAAgactttaaagaaattttaacatttcaatGTCCTGATTGTCCTAAATGTTTTGAGAAAAAGGCTTCATTGTCTGCCCATTATAAGGTGCATAAGAAAAGAGAActacttaaaattaataaatttaaaaagatggAACCGGGCTTGCACGAAGTAGAAGATGTTGTTTCCGATAATGGACAGCGAGAAGAAAATGATACAATGGAAAAAATACCTAAGGTTATTGTAAAGGAAGAAATCGAAATAACGCCACAAATTTTAGAAGAACCCATGGATGATTTTGATGATAAAGCCGAGTGGTTTAATAATGAATATGAGGATTCAGAAGATAATTCGGAAAAGGATTTTTTTGCTAAACCTGagacaaaagaaacaaaaaatttagattttgttGACACCGGCATAGGAGAAATTGAAAAacCCAATAGCAGCAATAAAAGAAGTGGTAATTTCCCTTGTGAAATGTGTGGCAAAATATTCGATCGTCCCTATCGCTTAAAACGCCATAGTTCTGTACACTCTTTAACACGACCACATGAGTGTGAAATTTGTAAATATCGTTTTGCCACGCTCAATATTCTAAAAGCTCATTTATTTCACCATGAAAACGAAACGGGAGGAAATTTTACCACACAATCACGTCCTGAGGGCTTTAAATGTCCGGATTGTCCAAGACGATTTGAAAAGCAAGCCTCCCTTTCAGCTCATAGACAAATACACACTCGAAATACCTCTGAAGCCAATTACCCCTGTATGGTATGCCAGCGTAATTTCATGTCTGTCAGATCCTTAACCGAACATATTACTAACAAACATCCAGAAGTTGAAAAACACAAATGTGATCAGTGCGATAAAACCTTTGTTCTACACGCTCATCTCGTAGAACATCTAAATCGTCATAAAGGCAATAGAAATTTGGTTTGTCTTATATGTGAAAAAGAATTTGGTTATACAAATACATTAAAAGAACATATGCGCACCCATAGTGGTGAAAGTCCTTACTTGTGTCCCCAATGTGGTAAAACATTTCGCAGTGCGAGTAATTTACGCCAGCACATGGAAAGGCATAAGGGTTTGAAAAAATATCAGTGTCCAGAATGTCCGAGTCGCTTTAATTGCAGAtcagatttaataaaacatgCATCAACACATTCGAATGCTAAGCCACATGTCTGTGATATTTGTGGTTCTCGATTTACAAGAGCATACTCACTGCAAAAACACAAGTTGTTGCATTCGGGAGAAAGGCCCTTCAAGTGTGATCAGTGTAGTATGACTTTTGCTATTATCTACCACCTACGTCGACATATGCGCACCCATACTGGAGAGAAACCTTATAAATGCAAATATTGTGAACGTGCTTATGCCGAAAGTGGAGacttaacaaaacatttaaggACGCATGTTGgtgaaaatacatatatgtgtgATCAATGTCCAATGGCATTTAAATATCAAGCTGAATTGAGGCAACATCAATCGCAACATTATAAAATGGCCCAGAAACTATTACAACAAGCACAAAAAATGTCCGATGAAGCACAACAACATCAAGAAATTAACGAACAAACTACACAACAACAAGTGCAACAACAGCAGTTGTCTATACAGGAACCGTATATTCAGCAACAACTATTAAAATCAGACCATATACAAAATGTGCCTATAGGTATACCAAGTTATCAACAAATACCATTATTAGATCACAGCCACACGGAACAATCACAGCAACAACATCAAGGAAAAATTGACGTTTTAGGaagacagcaacaacaacaagacaACTTAGATATAAAGAATCTCagtaattaa
Protein Sequence
MSSNLNSKCRTCLSDSNIYYQLYDYVEDNFKIVEMLDGIVPQIEIKTSSQFSTVMCQSCVEKLLTGYKFQQLCIETNNRLNDLLGIAFFDAEPKLEKVLDPLTGESSIKLKQEVEEDACFEREIRSDELERGMRSDIDNDWDPGDKGGSDTDSSNEKLSVLKERSFKKVPLRIDFFEKPHKLSRQKDNLPCTECGKIFSSINRLKQHTAIHDKKRAYSCEICNNKFTTDKSLKAHIVTHTNNGKIAKDQNSSIEKNDCKKVINSQNFLNVQSANLEEAEDACKDFKEILTFQCPDCPKCFEKKASLSAHYKVHKKRELLKINKFKKMEPGLHEVEDVVSDNGQREENDTMEKIPKVIVKEEIEITPQILEEPMDDFDDKAEWFNNEYEDSEDNSEKDFFAKPETKETKNLDFVDTGIGEIEKPNSSNKRSGNFPCEMCGKIFDRPYRLKRHSSVHSLTRPHECEICKYRFATLNILKAHLFHHENETGGNFTTQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNTSEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHKGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSDEAQQHQEINEQTTQQQVQQQQLSIQEPYIQQQLLKSDHIQNVPIGIPSYQQIPLLDHSHTEQSQQQHQGKIDVLGRQQQQQDNLDIKNLSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01235957;
90% Identity
iTF_01235955;
80% Identity
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