Pame001552.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- ZNF275
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000018.1:743791-747920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.03 3.4 9.6 0.1 3 23 191 211 189 211 0.91 2 15 0.0001 0.012 17.3 0.6 1 23 217 239 217 239 0.98 3 15 1.4e-06 0.00016 23.1 1.4 1 23 291 313 291 313 0.98 4 15 2.6e-05 0.003 19.2 0.4 1 23 433 455 433 455 0.96 5 15 0.27 31 6.5 2.4 1 23 461 483 461 483 0.93 6 15 4.8e-06 0.00055 21.5 0.3 1 23 500 522 500 522 0.98 7 15 0.023 2.6 9.9 0.5 1 23 531 554 531 554 0.95 8 15 0.00078 0.089 14.5 4.9 1 23 560 582 560 582 0.98 9 15 0.00021 0.024 16.3 0.4 2 23 589 610 588 610 0.97 10 15 2.6e-08 3e-06 28.6 0.7 1 23 616 638 616 638 0.96 11 15 0.0022 0.25 13.1 1.3 1 23 644 666 644 666 0.98 12 15 4.7e-05 0.0054 18.4 1.6 1 23 672 694 672 694 0.96 13 15 4e-05 0.0045 18.6 3.2 1 23 700 722 700 722 0.99 14 15 2.5e-06 0.00029 22.4 0.7 1 23 728 750 728 750 0.99 15 15 6.1e-05 0.0069 18.0 0.4 1 23 756 778 756 778 0.97
Sequence Information
- Coding Sequence
- ATGTCTAGTGATTTAAACTCAAAATGCCGCACTTGCCTAAGTGACTCTAAGATATTTTATCAATTATACGATTATGTGGAAGAAAACTTTAAAATCCTAGAAATGTTAGACGGAATAGTGCCCCAAATTGAAATTAAGACATCATCACAATTTTCCACCGTAATGTGTAAGTCTTGTGTGGAGAAACTGCTTACCGGCTATAAATTTCAACAATTGTGCATTGAAACCAATAATCGCTTGCATGATTTGTTGGGCATTGCGTTTTTTGATGCGGAGCCAAAATTAGAGAAGGTATTGGATCCCTTGACGGGTGAGTCCAGTATTAAAATGAAGCAGGAAGTTGAAGAAGATGCTTGTTTTGAATGTGAAATACCACCTGGTGAGCTGGAAAGAGGAATGAGATCAGATATTGACAATGACTGGGATCCAGGTGATAGGGGTGGAAGTGATACGGATTCGAGCAATGAAAAACTATCAGTTTTAAAGGAGAGATCTGCAAAAAAGTTACCTTTAAGAATTGATTTTTTTGAAAAACACCACAACCTAAGTCGTCAAAAGGGTAATTTACCTTGTATAGAATGTGGTAAAATATTTAGTAGTATAAATCGGCTTAAACAACATACAGCTATACATGATAAAAAGCGGGCTTATTCATGTGAAATTTGCAATAACAAATTTACGACTGACAAGTCTTTAAAGGCTCATATCGTTACGCATACGAACAATGGAAAAATTGCTAAAGATCAAACTAATAGTATTGAAAAGAATGACTGCAAAAACGTTCTTAACTCAAAAGATTTTTTTAATATTCCATCAGCAAGTGTAGAGGAAGCTGAAGATGATAGTAAAGACTTTAAGGAAATGTCAACATTTCAATGTCCTGATTGTCCTAAATGTTTTGAAAAAAAGGCTTCTTTGTCTGCCCATTATAAGGTGCATAAGAAAAGAGAACTACTTAAAATTAATAAATGTAAAAAGATGGAACCGGGCTTGCACGAATTAGCAGAAGTTATTTCCGATAACGGACAACTAGAAGGAAATGATTCGATGGAAAAAATAACTAAGGTTATTGTAAAGGAAGAAATTGAAATAACGCCACAAATTTTAGAAGAACGCATGGATTATTGTGATGATAAAGCCGAGTGGTTTAATAATGAATATGAGGATTCAGAAGAAAATTCGGAAACGGAATTTTTTGCTAAGCCTGAGACAAAAGAAACAAAAAATATTGATTTTGTCGACACCGGCATTGGAGAAATTGAAAAACCCAATAGTAGCAATAAAAGAAGTGGTAATTTCCCTTGTGAAATGTGTGGCAAAATATTCGATCGTCCTTATCGCTTAAAACGGCATAGTTCTGTACACTCTCTAGCACGACCACATGAATGTGAAATCTGTAAATATCGTTTTGCCACAGTCAATATCCTTAAGGCTCATTTGTTCCATCATGAAAATGAAACGGGAGGAAATTTTACTACACAATCACGTCCTGAGGGCTTTAAATGTCCCGATTGTCCTAGACGATTTGAAAAGCAGGCCTCCCTTTCAGCTCATAGACAAATACACACACGCAATACCTCTGAAGCCAATTATCCCTGTATGGTATGCCAACGTAATTTCATGTCTGTAAGATCCTTAACCGAACATATAACAAATAAACATCCAGAAGTAGAAAAACACAAATGTGATCAGTGCGATAAAACCTTTGTTCTACACGCTCATCTCGTAGAACATTTAAATCGTCATAAAGGCAATAGAAATTTGGTTTGTCTTATATGTGAAAAAGAATTTGGTTATACTAATACGTTAAAAGAACATATGCGCACCCATAGTGGTGAAAGTCCTTACTTGTGTCCCCAATGCGGTAAAACATTTCGCAGTGCAAGTAATTTACGCCAGCACATGGAAAGGCATAAGGGTTTGAAAAAATATCAGTGTCCAGAATGTCCGAGTCGGTTTAATTGCAGATCAGATTTAATAAAACATGCTTCAACACATTCGAATGCTAAGCCACATGTCTGTGATATTTGCGGTTCACGTTTTACAAGAGCATATTCACTGCAAAAACATAAATTGTTGCATTCGGGAGAAAGGCCCTTCAAGTGTGATCAGTGTAGTATGACTTTTGCTATTATCTACCacctacgtcgtcatatgcgcactcataccggcgagaaaccttataaatgcaaatattgtgaacgtgcttatgctgaaagtggagacttaactaaacatttaaggactcatgttggtgaaaatacatatatgtgtgatcaatgtccaatggcatttAAATATCAAGCTGAATTAAGGCAACATCAATCGCAACATTATAAAATGGCCCAAAAACTATTACAACAGGCACAAAAAATGTCCGATGAAGCACAACATCAAGAAGTTAACGAACAAGCTGCACAACAACAAGGCCAGCAACAGCAATTACCTATACAAGAACAGCATACTCAGCAACAACTATTAAAATCAGACCATATACAAAATGTGCCTATAGGTATACCTTGTTATCAACAGATACCATTATTAGATCATAGCCAACAAATGACTACAATGGTAGAACAATCACATCAACAACATCAAGGAAAAATTGACGTTTTAGTAAGACAACAACAAGACAACTTAGATATAAAGAATCTCAGTAATTAA
- Protein Sequence
- MSSDLNSKCRTCLSDSKIFYQLYDYVEENFKILEMLDGIVPQIEIKTSSQFSTVMCKSCVEKLLTGYKFQQLCIETNNRLHDLLGIAFFDAEPKLEKVLDPLTGESSIKMKQEVEEDACFECEIPPGELERGMRSDIDNDWDPGDRGGSDTDSSNEKLSVLKERSAKKLPLRIDFFEKHHNLSRQKGNLPCIECGKIFSSINRLKQHTAIHDKKRAYSCEICNNKFTTDKSLKAHIVTHTNNGKIAKDQTNSIEKNDCKNVLNSKDFFNIPSASVEEAEDDSKDFKEMSTFQCPDCPKCFEKKASLSAHYKVHKKRELLKINKCKKMEPGLHELAEVISDNGQLEGNDSMEKITKVIVKEEIEITPQILEERMDYCDDKAEWFNNEYEDSEENSETEFFAKPETKETKNIDFVDTGIGEIEKPNSSNKRSGNFPCEMCGKIFDRPYRLKRHSSVHSLARPHECEICKYRFATVNILKAHLFHHENETGGNFTTQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNTSEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHKGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSDEAQHQEVNEQAAQQQGQQQQLPIQEQHTQQQLLKSDHIQNVPIGIPCYQQIPLLDHSQQMTTMVEQSHQQHQGKIDVLVRQQQDNLDIKNLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235957;
- 90% Identity
- iTF_01236969; iTF_01237888; iTF_01235957;
- 80% Identity
- -