Pame001553.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia amentaria
Gene Symbol
-
Assembly
GCA_943735935.1
Location
CALSEV010000018.1:748332-752632[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.027 3.1 9.7 0.1 3 23 191 211 189 211 0.91
2 14 2.4e-05 0.0028 19.3 0.6 1 23 217 239 217 239 0.98
3 14 2.1e-06 0.00024 22.6 1.7 1 23 291 313 291 313 0.98
4 14 2.4e-05 0.0027 19.3 0.4 1 23 422 444 422 444 0.96
5 14 0.0019 0.21 13.3 4.4 1 23 450 472 450 472 0.95
6 14 4.4e-06 0.0005 21.6 0.3 1 23 489 511 489 511 0.98
7 14 0.035 4 9.3 1.0 1 23 520 543 520 543 0.95
8 14 0.00072 0.082 14.6 4.9 1 23 549 571 549 571 0.98
9 14 0.0002 0.022 16.4 0.4 2 23 578 599 577 599 0.97
10 14 8.9e-08 1e-05 26.9 1.2 1 23 605 627 605 627 0.96
11 14 0.002 0.23 13.2 1.3 1 23 633 655 633 655 0.98
12 14 0.0005 0.057 15.1 1.3 1 23 661 683 661 683 0.96
13 14 3.9e-05 0.0044 18.6 3.7 1 23 689 711 689 711 0.99
14 14 2.3e-06 0.00027 22.5 0.7 1 23 717 739 717 739 0.99

Sequence Information

Coding Sequence
ATGTCTAGTGATTTAAACTCAAAATGCCGCACTTGCCTAAGTGACTCTAAGATATTTTATCAATTATACGATTATGTGGAAGACAACTTTAAAATCCTAGAAATGTTAGACGGAATAGTGCCCCAAATTGAAATTAAGACATCATCACAATTTTCCACCGTAATGTGTAAGTCTTGTGTGGAGAAACTGCTTACCGGCTATAAATTTCAACAATTGTGCATTGAAACCAATAATCGCTTGCATGATTTGTTGGGCATTGCGTTTTTTGATGCGGAGCTAAAATTAGAGAAGGTATTGGATCCCTTGACGGGTGAGTCCAGTATTAAAATGAAGCAGGAAGTTGAAGAAGATGCTTGTTTTGAATGTGAAATACCATCTGGTGAGCTGGAAAGAGGAATGAGATCAGATATTGACAATGACTGGGATCCAGGTGATAGGGGTGGAAGTGATACGGATTCGAGCAATGAAAAACTATCAGTTTTAAAGGAGAGATCTGCAAAAAAGTTACCTTTAAGAATTGGTTTTTTTGAAAAACACCACAACCTAAGTCGTCAAAAGGGTAATTTACCTTGTATAGAATGTGGTAAAATATTTAGTAGTATAAATCGGCTTAAACAACATACAGCTATACATGATAAAAAGCGGGCTTATTCATGTGAAATTTGCAATAACAAATTTACGACTGAAAAGTCTTTAAAGGCTCATATCGTTACGCATACGAACAATGGAAAAATTGTTAAAGATCAAACTAATAGTATTGAAAAGAATGACTGCAAAAACGTTCTTAACTCAAAAGATTTTTTTAATACGCCATCAGCAGGTGTAGAGATAGCTGAAGATGATAGTAAAGACTTTAAGGAAATGTCAACATTTCAATGTCCTGATTGTCCTAAATGTTTTGAAAAAAAGGCTTATTTGTCTGCCCATTATAAGGTGCATAAGAAAAGAGAACTACTTAAAATTAATAAATGTAAAAAGATGGAACCGGGCTTGCACGAATTATCAGAAGTTATTTCCGATAACGGACAACTAGAAGGAAATGATTCGATGGAAAAAATAACTAAGGTTATTGTAAAGGAAGAAATTGAAATAACGCCACAAATTTTAGAAGAACCCATGGATTATTGTGATGATAAAGCCGAGTGGTTTAATAATGAATATGAGGATTCAGAAGAAAATTCGGAAACGGAATTTTTTGCTTTTGTCGACACCGGCATTGGAGAAATTGAAAAACCCAATAGTAGCAATAAAAGAAGTGGTAATTTCCCTTGTGAAATGTGTGGCAAAATATTCGATCGTCCTTATCGCTTAAAACGGCATAGTTCTGTACACTCTCTAGCACGACCACATGAATGTGAAATTTGTAAATATCGTTTTGCCACAGTCTATAACCTTAAGTCTCATTTGTTCCATCATGAAAATGAAACGGGAGGAAATTTTACTACACAATCACGTCCTGAGGGCTTTAAATGTCCCGATTGTCCTAGACGATTTGAAAAGCAGGCCTCCCTTTCAGCTCATAGACAAATACACACACGCAATACCTCTGAAGCCAATTATTCCTGTATGGTATGCCAACGTAATTTCATGTCTGTAAGATACTTAACCGAACATATAACAAATAAACATCCAGAAGTAGAAAAACACAAATGTGATCAGTGCGATAAAACCTTTGTTCTACACGCTCATCTCGTAGAACATTTAAATCGTCATAAAGGCAATAGAAATTTGGTTTGTCTTATATGTGAAAAAGAATTTGGTTATACTAATACGTTAAAAGAACATATGCGCACCCATAGTGGTGAAAGTCCTTACTTGTGTCCCCAATGCGGTAAAACATTTCGCAGTACAAGTAATTTACGCCAGCACATGGAAAGGCATAAGGGTTTGAAAAAATATCAGTGTCCAGAATGTCCGAGTCGGTTTAATTGCAGATCAGATTTAATAAAACATGCTTCAACACATTCGAATGCTAAGCCACATGTCTGTGATATTTGCGGTTCACGTTTTACAAGAGCATATTCAGTGCAAAAACATAAATTGTTGCATTCGGGAGAAAGGCCCTTCAAGTGTGATCAGTGTAGTATGACTTTTGCTATTATGTACCacctacgtcgtcatatgcgcactcataccggcgagaaaccttataaatgcaaatattgtgaacgtgcttatgctgaaagtggagacttaactaaacatttaaggactcatgttgAAGTTAACGAACAAGCTGCACAACAACAAGGCCAACAGCAGCAATTACCTATACAAGAACAGCATACTCAGCAACAACTATTAAAATCAGACCATATACAAAATGTGCCTATAGGTAAACCTAGTTATCAACAAATACCATTATTAGATCATAGCCAACAAATGGCTACAATGGTAGAACAATCACATCAACAACATCAAGGAAAAATTGACGTTTTAGTAAGACAACAAGACAACTTAGATATAAAGAATCTCAGTAATTAA
Protein Sequence
MSSDLNSKCRTCLSDSKIFYQLYDYVEDNFKILEMLDGIVPQIEIKTSSQFSTVMCKSCVEKLLTGYKFQQLCIETNNRLHDLLGIAFFDAELKLEKVLDPLTGESSIKMKQEVEEDACFECEIPSGELERGMRSDIDNDWDPGDRGGSDTDSSNEKLSVLKERSAKKLPLRIGFFEKHHNLSRQKGNLPCIECGKIFSSINRLKQHTAIHDKKRAYSCEICNNKFTTEKSLKAHIVTHTNNGKIVKDQTNSIEKNDCKNVLNSKDFFNTPSAGVEIAEDDSKDFKEMSTFQCPDCPKCFEKKAYLSAHYKVHKKRELLKINKCKKMEPGLHELSEVISDNGQLEGNDSMEKITKVIVKEEIEITPQILEEPMDYCDDKAEWFNNEYEDSEENSETEFFAFVDTGIGEIEKPNSSNKRSGNFPCEMCGKIFDRPYRLKRHSSVHSLARPHECEICKYRFATVYNLKSHLFHHENETGGNFTTQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNTSEANYSCMVCQRNFMSVRYLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSTSNLRQHMERHKGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSVQKHKLLHSGERPFKCDQCSMTFAIMYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVEVNEQAAQQQGQQQQLPIQEQHTQQQLLKSDHIQNVPIGKPSYQQIPLLDHSQQMATMVEQSHQQHQGKIDVLVRQQDNLDIKNLSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01237888; iTF_01236969; iTF_01235955;
90% Identity
iTF_01235955;
80% Identity
-