Pgri037584.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963931875.1
- Location
- OZ007563.1:22012551-22018460[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-117 5e-113 379.2 25.9 1 299 8 304 8 305 0.94 2 2 0.094 2e+03 -0.4 3.7 220 245 333 358 308 379 0.47
Sequence Information
- Coding Sequence
- ATGTTGAAGCATTTCCCTTATgCTGAGGCTAGATTAGCTGCCAGAAGGCATGCCAGAGCAGAAGCTCGAGAAATACGCATGCGAGAATTGGAACGTCAGCAAAAAGAACAAGAGTCCAATGCAGATCGGGTATTCGATATGCATTCAACGGTTACTGGTATTACGCCACTGTCACACATACGTTTGGGCTTAGGGAGTTCTCCAGTTTCTGGCTTACTCAATTCGACCAGAGGCAACTCAATGTCTTCAAGACGCAGTAGTGAAGATTCTTTAGAAGAGGAAGGCCGCAGCTTAAGAGATATACGTCATGAGTTAAAGgatGTCGAAGAACGATTTCGCAAAGCTATGATAGCGAATGCTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTTAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAACGTGAGTGTAAGGAAAAGACACGCGATTGTAATGCCTTGAAGCGATCGTTGGATAAATTAAGCGAAGAACTTAAACTAGTACAGGGTCAGCTGAATGAGCGTGATACGCTGATAGCAGAACAGGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTcgacttaaaaaatttagcgaagAGAAACAACAACTGCAGTCTGAAGTCCATCAGTTGCAGGAACAGTTAGAAAACTATAAAAGTCAGGGCAAAGGACGTGGTAAAGGCAATTCTACAAATGGTCCCTTAGGTTCAGACGATGATGATTATGAAGCTCAAAGAGAAGCTAATAAAATCATATCggattataaatataaattgcaAAAAGCTGAACAGGAAATCGCTAGTCTACAATCAAGTTTAGCCCGTTCTGAGACACAAGTAATTCGCTATAAAAGTACAGCTGAGGCTGCAGAAAAAGCTGAAGCCGAACTTAAAATCGAAAGGAGGAAACTGCAAAGAGAGAATCGAGAGGCAATGGAGAAACTCGAAGAGTTAGAAACATCAAATAATCATCTTCTGAAACGTTTGGATAAATTAAAGAATGCCAAAAGTGCTTTGCTTAAGGATCTCTGA
- Protein Sequence
- MLKHFPYAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHIRLGLGSSPVSGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVHQLQEQLENYKSQGKGRGKGNSTNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331516;
- 90% Identity
- iTF_00331516;
- 80% Identity
- -