Pame006278.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia amentaria
Gene Symbol
-
Assembly
GCA_943735935.1
Location
CALSEV010000086.1:3175640-3189164[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.092 10 8.0 0.7 1 23 1343 1366 1343 1366 0.91
2 12 1.8 2.1e+02 3.9 1.0 1 23 1529 1551 1529 1551 0.93
3 12 0.00069 0.078 14.7 2.8 2 23 1554 1575 1554 1575 0.97
4 12 0.00012 0.013 17.1 0.2 3 23 1583 1603 1581 1603 0.98
5 12 6.8e-06 0.00077 21.0 5.8 2 23 1610 1631 1609 1631 0.97
6 12 7.7 8.8e+02 1.9 0.1 5 23 1644 1662 1643 1662 0.96
7 12 0.033 3.8 9.4 0.1 2 23 1701 1721 1700 1721 0.96
8 12 1.1e-05 0.0012 20.4 0.4 1 19 1727 1745 1727 1749 0.95
9 12 4.6e-06 0.00052 21.5 1.8 1 23 1757 1779 1757 1779 0.99
10 12 0.00016 0.018 16.7 6.5 1 23 1785 1807 1785 1808 0.96
11 12 0.00097 0.11 14.2 6.4 1 23 1813 1835 1813 1835 0.99
12 12 0.0026 0.3 12.9 5.8 1 23 1841 1863 1841 1864 0.96

Sequence Information

Coding Sequence
ATGCAACATCATCAAAAACCCCCACCGGCCTATGGCACTGCAATTAGTCAAATACGATCTCAACATAATCAAAATAAGCATCAAGTGACAGGGTTATTAGCAACGCAACTTCATCATCAAACATTACATTCAGTTTTACAACAACAACATCAACAACAGCAGCAACAACATAATTTGCAACCACAGCAAACGTTGCAAAATAATATAAGAATTCAAATACCACCGCCACCACCACCACCACCAATTCCAACAACAAAACATACATATTCGCCAAAAAATAGCGATTTGTCAATTCAAAATCATGCAATTTCTAGACATAGTCAGTCCCAACAACATCAGCAACAACCCAAGGCATATTTGTCACAACATCAGCAAAACCAGCAGCAGCAAGAACAACAATTGCAAGCAAACTCGGAAAATACACACAATTCTAACAATCACATTCCTAATTCCGAAATATCGAACAAGTCGTCATTAAAGGCAATATCTTCCTCAACATTGCAAAATCCAAATACAAATGTTCCATTATATCCACAAGTTTCAATTAGTCCATCTGCTGCTTCAGCTTCAATGGCAGCCGTAGCGGCATCAACATTAGGAAGACATACTAACTCACCATTTGCAGCATTATTAGCCGCAGCAGCCGGCACTCCATCGCCTTCGAATCCTTCATCTGTTTTGAGGTATGCAGAGTCACCTGTGGCTCATTATTTAGAACGGGAAAATGGTGATTTTATCGTACAAGAAACTCCGAAGCATATTGTTGAATGTGTTGAAACAGATAATGGTGAATTCTCTGTCATTGAACGTATATACCAATCTCCACCCAGTGTTTTACACATTCATGATAACGATGACGAGGATGATGATGTTGATAATGATAACTGTAAAGACCGACCTGAATTGATGGAACAACATGATAATAAGCATGGTGTTGTTGATGGTGAAGGTGCTAAGGTAAAATGTGAATCTAGCGAAAAGCAAAGTAAAACAAAAATTTACTCCAAAGACGATGAAACCAATAAGGGCAAAAGGAATACTAAGTCTGATGATGAAAGCTCAGTCGATAACGATATTGTTGATTTTGTTAGTATATCTAGTGATAGCGGTAACGAAGAAGAAGAATTCATATCCCAAGAACGAAAAAATAAAAAAAATTCCACCGAGAAAAACAAAAAGAATCAAACAAACACATCCAGACTCTCAATAACATCAACGTCAACGTTATCGTTATCGACTTTATCTTCTTCACCGCCTACTATAGCCAAATCAGGTGTTGACTACCAATCACCAACTTCTTCTTCATCCATTTCATTACATACTCCTTTGGCCAACGCAAATTCAATACCTACACAACAAAATTCTGCAGCCACCACACCTACAAACAACAGCAGTGGTCGAAAGAAATCGTCTAAAAACACAATAACAGTTTTAAGCGATGTTCAATTAAATTTAAACGAATATTTAGATTTGGTAGGAAATATAATTGCTTCGAGTAAAGTAGCGGCACAGCGTAAAACGTTTGCATCTATAGCTCCTATTCCTCTAGTAAAAATCGAAAAGGAAGAGCCCATGGATGAGTACGTAACAACAAACAATACAACTTTAAAAACTGCTACCACTACAGCACCAACAAACTTTGAAACACCACCAACACCTTTAAAGGCAAATAAACATGAGACTGAAGAAAAAACTGATACCCCTAGCAGTAGTAATAGTAGACAAACTACAACTAATCATAATATAAATTTAACAAACGAACTAGAACAGGATGAAACAGAACAGAAAAAACCTCAGGTCATCGAAAATATATGCGAAAACGGGCCAACATATACAGCTGTTTCCAATGCCTCAACAAGCCTAATGACTATAAATTCCAGTCATGTTACCAGTGTTATACGTATGGCCACAACTAGTCAACAACATCAGCATCAAGCGCAACAACAAGACCAATTGCTTAATTCTTTGGAAAGCAATAAAAACTCCTTTGAAGCTGAGGATCTATCACAACCACAACGAAAAGTGCAATCTGTTGCAAATTCCAAATTGTTAGGCCACATGCCGTTGACACGGAAAGGTCCCAAAAAACTAGTTATAAAGCCAAAATCTTCAAAGACTGAAGTATTGTCTACCACAACCCCTGCAAATACAGCAAACCAAAATTCCGTAAACAATGATCAGGAAATGCCAACTACTTCGACTAAGGCTCGACAAGAATATACGAAACAAACTTCTCTTGAGGAAGATACACTAAATATCATAGATATAAAAGTAAAAAATGAACCAATCACTTATGAAAATCTTCAACCACAAACTCAATATCCACAACCTACAAATTTCAGTATCTTGGAACAACATCTTAGTTCGAAAGAACCTATTCTTGAGTTTAAAGAGGAAAAACCATGCATTACAGAAGCCAACGTGCCGCCAACGACGATCATAAAGGAGATGAAGGTAGAAAATACTGTTAACGACGATGCACGTGTTCTGTACGATTTTGCAAATTCCAAAAAATCACAAAATGAAACGCCGGCGACTTTTCCATCATCCACGTCGGTTTTTTCATGTAAACAAACTAACGTAGAAATAGCACCAGTTGAAGAGCTCCAACAACAGCAACAACTTAAGAATATAAATAATGAAAATGAGACTTCAACCTCTTCATCATCAACATATTCGTCACAATCACCTATGGGTGTTATAATGCCAACTGAAGAACATAATGAAAGTTCCACTACAAATGCTTCAGCTGCTACAAATGTACACACTCAACAGCAAACGAATCAGGTGTATACCGATTTTCATTTTAATTATCTCTATAATAATAGTGGCAACAATGTCACCCCAGTTGCAATTGAACAAGCCGACTTAAAAAATCATCAACAATTTACATCATTTTATCCAAATTCTGGCAATAACAATACAATACTGATGGAAGACTCGTCGTCTAGTAAACACTATGCAGATTATCAACAACAACAGCAGCATAATCCACATCAACCACAACAACAACAGCAGCATCAGACTGCTGGAACATCACATCATCAATGGTTTAACAATAACACCTACCAAACATCGGAAACCAATATTACACCAGTCACTTCAAATCTTTCAGTTTCCAATATAAATAATGCTTTATCCGTTGATGACAGTGGGGCTACCGGTAAATATTTGGACTTAGATTCTTGTAAACGAGAGCAAAAAATTGAAATAATTGTTGGCGATCGTATTACTGTGCCACCGCCGCCACCCCCATCTTCCTCGACTTCGTGTTCATTTAATGGTACAACCGATAATAGTATGGCCGGTATCTGTTCGACGGCATCCACCCTGAATATTCGAACCGATGAAAAAATGCCAGCTAAAGGTGAAATTTCCGAACAGGAAAGTAATTGCGATATTGATAACTCATGGAGTCAGCCGATGTATGGCGATATTTCGGCGCGTTTCTTTAAAACTACTTTTCCCGGCATCTTTCCTCAAGACAACGGCTGGAATCACGAGGAATATTTTACTGTACAGGATTTGAGTGCATCAACAACAGCTCAAGCCACTAATAGTGCCAATAATAGATTTAAGAGTTTTGACCCGAGCAATAGCAGTAGCAACAACAACAGCAATGTACAAATGCCAATATTTTCCCAAAATTCTAATGATAATTGTAATATTGATGTAATGCCGTCAACGTCAGCAAAAATACGCAAGAGACGTAAACGTGGTTCTCAAGATGGCAAAACGTCACAATCAAATGGAAAGCGTATGCAGCCAACATCAACAGTTACCTCACAACAAATGCTTATGCAACTACAAAGTGAGATCAATGGAGCTGAGTTTAGTTTTCAACATCAACAGCTGGAAAATCAGCATCATATACAACAACAACAACATGTGCATCAACCCAGTACATCCACAGCATTTTTGGCAGGACCATCAAGTGTTAGTACTGCTTTTATGATGCAGCAACAGCAGCAACAACAACATCAACCACAACAACATCAAACACAACAAAAACAACGCACAAAAGTTTATGAATGCGGCCATTGTAATGTCAAATATTCCAAACTTAAAGATCGCAATGCTCACATGGTTGATGTTCATAACTACATACGACAAAATAGAAGATTAGTGTGCCCTACAACAGGACTTGCAACACCTCTAAACAATTCAGAAGATGTTGCCCTGCCCACAACAAGCGCTGCGGGCAACAGTTTGGTGCCTGCCCTGCAGCAAAATTCTGAATGTGTGGGCGATTTTAAACAGGGCATAGTAAAAGTCGAAACTGAAAACCCAACCCAACGCGATTTATTTGGCGTAGAGCTGATAAATGCCAACTTAAGTGCTAAAACGGAAATTATGGAGGATGATAAAAAAAATCTAACTCTAGTACCCTTGATTGCAGCAAATTCTGAAACAAACGCTGAATACGACTCTAAACCACCCACCAATAGTTTGCCATTGTCGTTAACAACACCCACCAGTAAATTAACCACACTGTATCGCATGCTGGTATCGTTTAATATGACCACATTAAAACAAAACCAAAGTCTTTCTGAATTAGATGAAAATCTTATAAAATCTTCCATATTTTTTTGCTACATCTGTCGGCAGAACTTTAATTCGGTAAAGCTATACGATGCTCACTTGACGGAACATCCAGCCGAATGTTTTACATGTGGCAAAAAATTCCAAAGATGGAAAAATTTTTCATTACATTTAAAACGTCATTTGGGTTGGAAGGAATTCGGTTGTACGGTATGCGAAAAGAAATTTGTAGTGCGAAGTGCTCTTGTTGAACATATGCGCATGCATTCCGGACTATCACCATTAAAATGTAAAGTTTGTGGAAAGCACTTTAAACGTTATTCGAATTTGACTCAACATCGGAAGCGGCATACAAAACAATTTGTTCGTAGAAAAGAGTATGTTTGTTATTGTGGAGAAGTTTTACCATCCAAAGCACGTTTCTTATGGCACAAGGAAACTCATGATTCTAAACCGAAATGTTGTCCACATTGTTGTGATCGTTTCGTGCATGTAAACTCTTTGCGACGGCACATACGTCTTGCTCATTCGGATAAATTCGATTATACCGAACCAATGGAGTGTCCTATATGCAAGCAAATATTTGCCAAAGCCTCTATGAAAGCTCATATGGCAACGCATTCCACAGAAACTCAGTATGATTGTCCTATTTGCAACAAGTCTTTCTCGACTAAATGGAATCTAAAAATTCATTCTTGGGTACATGCTAATAGAACCGCTAAACCTTTCAAATGTGAACACTGTCCTAAGGCATTTGTGCGTGAAGTTGATTTCAAGAATCACATGAATTCTCACAAACAAATCAAACCGTACACGTGTGAAGTGTGCGGCTGTAAGTTTATACGAAAATACAATTACATGCGGCATAGAAGGGAACATCATGGCAATAAAAAGTATACCTGTGATCTATGTAAAAAGTCGTTTCATCGTCACTACTATCTCATCGAACATAGACGTATACACACCGGCGAACGACCCTTTCAATGTTCGATATGCGGTAAAAGTTCAACAACCAAAACAAATCATAATAAACACTTAAAGATTCATCATTCACGTGATCCCTTTACAGTGGAAGTATAA
Protein Sequence
MQHHQKPPPAYGTAISQIRSQHNQNKHQVTGLLATQLHHQTLHSVLQQQHQQQQQQHNLQPQQTLQNNIRIQIPPPPPPPPIPTTKHTYSPKNSDLSIQNHAISRHSQSQQHQQQPKAYLSQHQQNQQQQEQQLQANSENTHNSNNHIPNSEISNKSSLKAISSSTLQNPNTNVPLYPQVSISPSAASASMAAVAASTLGRHTNSPFAALLAAAAGTPSPSNPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVETDNGEFSVIERIYQSPPSVLHIHDNDDEDDDVDNDNCKDRPELMEQHDNKHGVVDGEGAKVKCESSEKQSKTKIYSKDDETNKGKRNTKSDDESSVDNDIVDFVSISSDSGNEEEEFISQERKNKKNSTEKNKKNQTNTSRLSITSTSTLSLSTLSSSPPTIAKSGVDYQSPTSSSSISLHTPLANANSIPTQQNSAATTPTNNSSGRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKVAAQRKTFASIAPIPLVKIEKEEPMDEYVTTNNTTLKTATTTAPTNFETPPTPLKANKHETEEKTDTPSSSNSRQTTTNHNINLTNELEQDETEQKKPQVIENICENGPTYTAVSNASTSLMTINSSHVTSVIRMATTSQQHQHQAQQQDQLLNSLESNKNSFEAEDLSQPQRKVQSVANSKLLGHMPLTRKGPKKLVIKPKSSKTEVLSTTTPANTANQNSVNNDQEMPTTSTKARQEYTKQTSLEEDTLNIIDIKVKNEPITYENLQPQTQYPQPTNFSILEQHLSSKEPILEFKEEKPCITEANVPPTTIIKEMKVENTVNDDARVLYDFANSKKSQNETPATFPSSTSVFSCKQTNVEIAPVEELQQQQQLKNINNENETSTSSSSTYSSQSPMGVIMPTEEHNESSTTNASAATNVHTQQQTNQVYTDFHFNYLYNNSGNNVTPVAIEQADLKNHQQFTSFYPNSGNNNTILMEDSSSSKHYADYQQQQQHNPHQPQQQQQHQTAGTSHHQWFNNNTYQTSETNITPVTSNLSVSNINNALSVDDSGATGKYLDLDSCKREQKIEIIVGDRITVPPPPPPSSSTSCSFNGTTDNSMAGICSTASTLNIRTDEKMPAKGEISEQESNCDIDNSWSQPMYGDISARFFKTTFPGIFPQDNGWNHEEYFTVQDLSASTTAQATNSANNRFKSFDPSNSSSNNNSNVQMPIFSQNSNDNCNIDVMPSTSAKIRKRRKRGSQDGKTSQSNGKRMQPTSTVTSQQMLMQLQSEINGAEFSFQHQQLENQHHIQQQQHVHQPSTSTAFLAGPSSVSTAFMMQQQQQQQHQPQQHQTQQKQRTKVYECGHCNVKYSKLKDRNAHMVDVHNYIRQNRRLVCPTTGLATPLNNSEDVALPTTSAAGNSLVPALQQNSECVGDFKQGIVKVETENPTQRDLFGVELINANLSAKTEIMEDDKKNLTLVPLIAANSETNAEYDSKPPTNSLPLSLTTPTSKLTTLYRMLVSFNMTTLKQNQSLSELDENLIKSSIFFCYICRQNFNSVKLYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCEKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHTKQFVRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYTEPMECPICKQIFAKASMKAHMATHSTETQYDCPICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCSICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01237989;
90% Identity
iTF_01237989; iTF_01237074;
80% Identity
-