Pame032006.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000619.1:48463-96134[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 4.4e+04 -14.7 28.5 37 213 30 206 13 216 0.64 2 4 0.14 6.1e+03 -2.5 4.5 28 75 223 281 214 304 0.40 3 4 7.5e-117 3.3e-112 375.9 26.4 1 299 347 643 347 644 0.93 4 4 0.058 2.5e+03 -1.3 3.7 220 245 672 697 647 718 0.47
Sequence Information
- Coding Sequence
- ATGGATACTACAAGTGCCGTAGGTCGGCGTCGAGTTAATTCCCGTGTTAATGCCGAGGATCAAGCTTTGGATCAAATAGCAAAAGAGGCATTGAAAACGTCAAAAAGTAAAAAAAATACAAACCCTGCTACTAATATCAACAATAAAAATACAAATAACAATAACAGTAATAGTAGCAGCAGCAGCAACAACAACAATGTTGAAGTAGTAAACGATGAAATCATCGAGGAGTTGTTTGACTTTAGCGATACCGATTTAAAAGAACTCGAAGATACAAATAACGAAAAAATTAACAGCAACAACAATACCAAGAACTCAATCTTTGGTACTACTAATGATGACGAGCTTTTAACTAAAGATAGCGATAAGTTAAAGGAAAATAAGGAGGATGTCGATAAAGAGTCAGAGGTGCAATTGCAAAATATAATAAGTGATAATAACAATAATAATCACAATAATGAAAAAGAAAAACAAGAAGAACAACAACAACAACAGGTGGTGGTGGAAGAATTGATATCGTCGCCAATTGATAACATTGATAAACAAAACAAAGAAGACAGAAAAGATAGCGAATTAGACACGACTGTGACACTAACAACAGACACAGCGGACGCGTCTGCGGCAACTGCAAATATTATTATTGGCGAAGAAGATAATATAGATAATAAAGAATTTGATAAAAACCAACAACAAAAGTCACCAGAAGCAGAAGAAAGCAATGCAAACGACTCAAACAAGCTTAAAACACTTAATAAAGAATCCAATACTATTCCCGTGCAATTCTCTAACAGTTCCATTGTTAGCCCAGACTCGGACAGCAAAAAGTCGCCATCTACAGACAGCCAGTCTATGAAAATAAACACGGCTCCAGAGTCGCCTTCGTCTTTCGATGATAAGAAAAAAAGTAGTTATTGTCAGAGAGAAGATAACAATGAACCAAATCATACTAATGATGGCGGTGATGGTGATGAAGATGATGAGTATGCCGAACCATATAATGAACTTTTAGTTCAATTCCTTGATGAAGCCAATCATATTGCTGAGGCAAGATTAGCTGCCAGAAGGCATGCCAGAGCAGAAGCTCGAGAAATACGCATGCGAGAATTGGAACGTCAGCAAAAAGAACAAGAATCCAATGCAGATCGTGTATTCGATATGCATTCAACGGTTACTGGTATTACGCCTCTGTCACACATGCGTTTGGGTTTAGGGAGTTCTCCAGTTTCTGGTTTACTCAATTCGACTAGAGGCAACTCAATGTCTTCAAGACGCAGCAGTGAAGATTCTTTAGAAGAAGAAGGCCGCAGCTTAAGAGATATACGTCATGAATTAAAGGATGTCGAAGAACGATTTCGTAAAGCTATGATAGCGAATGCTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTTAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAACGTGAGTGTAAGGAAAAGACACGAGATTGTAATGCCTTGAAACGATCGTTGGATAAATTAAGCGAAGAACTTAAACTAGTACAGGGTCAGCTGAATGAGCGTGATACGCTGATAGCAGAACAGGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTAGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAATTTAGCGAAGAGAAACAACAACTGCACGCTGAAGTCCAGCAGTTGCAGGAGCAGTTAGAAAACTATAAAAGTCAGGGCAAAGGACGTGGTAAAGGCAATTCTTCAAATGGTCCCTTAGGTTCAGACGATGATGATTATGAAGCTCAAAGAGAAGCTAATAAAATCATATCGGATTATAAATATAAATTGCAAAAAGCTGAACAGGAAATCGCTAGTCTACAATCAAGTTTAGCACGTTCTGAGACACAAGTTATTCGCTATAAAAGTACAGCTGAGGCTGCCGAAAAAGCTGAAGCCGAACTTAAAATCGAAAGGAGGAAACTGCAAAGAGAGAATCGAGAGACAATGGAGAAACTCGAAGAGTTAGAAACATCAAATAATCATCTTCTGAAACGTTTGGATAAATTAAAGAATGCCAAAAGTGCTTTGCTTAAGGATCTCTGA
- Protein Sequence
- MDTTSAVGRRRVNSRVNAEDQALDQIAKEALKTSKSKKNTNPATNINNKNTNNNNSNSSSSSNNNNVEVVNDEIIEELFDFSDTDLKELEDTNNEKINSNNNTKNSIFGTTNDDELLTKDSDKLKENKEDVDKESEVQLQNIISDNNNNNHNNEKEKQEEQQQQQVVVEELISSPIDNIDKQNKEDRKDSELDTTVTLTTDTADASAATANIIIGEEDNIDNKEFDKNQQQKSPEAEESNANDSNKLKTLNKESNTIPVQFSNSSIVSPDSDSKKSPSTDSQSMKINTAPESPSSFDDKKKSSYCQREDNNEPNHTNDGGDGDEDDEYAEPYNELLVQFLDEANHIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSSPVSGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLHAEVQQLQEQLENYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENRETMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237652;
- 90% Identity
- -
- 80% Identity
- -