Pfus010388.1
Basic Information
- Insect
- Polistes fuscatus
- Gene Symbol
- -
- Assembly
- GCA_010416935.1
- Location
- QUOI01000013.1:3593684-3597266[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-13 4.1e-10 38.9 0.0 1 39 285 324 285 328 0.90 2 4 1.9e-12 2.6e-09 36.4 0.1 2 39 340 377 339 380 0.94 3 4 4.4e-19 5.9e-16 57.6 0.0 1 45 394 439 394 439 0.97 4 4 8.1e-19 1.1e-15 56.8 0.1 1 42 446 488 446 489 0.97
Sequence Information
- Coding Sequence
- atgaaaattagtGATCATAATTCGGGGTCGCTTTTGAAAACGGCCGACCAATTGAAAATCAAGGGCCTCTGTGAAGTACCTGAAAGTAAGGACGGGCCACCATCAGTGAGTTTAAGCTCACCACCGAGAGAACCTGGTTCACAAAGATTCAACTTTACCAGGTTGAAGAGACCTTATCCAAGGTACAAGAGAACGAGGACATCATTTGAGCCTCGTGCCACTGATTCTAGGCATTACGATAGAtataaagaggaagaggacAGTGATAGTTACCATCGCAAAAATAAAGAGAATCGCAGAGACTGGCAGGTAGAAGATGAAGAGTGCACGGAGGTGGCAGCGGCAGCAGCAGTAGTTCTGGAAAGCTGCCAACGTAACAGTAACAATAGCACCAACAACGCTAACGGtacaaacaacaacaacaataacgGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCACCCAGATCCTGAGGTAGATCTGCCTCCAGAAACACAGCCCACACCACCTAGCGCTACTTTGGTCGGTACCACCATCACTCATTTGCGAGACTCTGATCATCATTCGACTGAGATACAAAATTGCGATACAGTGAAGATCAAGTTCGAAACCCTGCACACGATGGATTCTTCGGACACGATCGATATCGACAGTCACATGTCGGACAGAGCTAGTGTAAGCTCAAAAAATGCTGCGGACAGCGATAATATGATGATGATAACGCCTGAACTTCTCGGACTCATGCCCTCTGGCAGTTCGATTCATTCGGACTCGGGTGAAAATAATTCGAGAGGTCATTCTGGACAGTCGAGTTCACATCATCATGGTAATAAATCTTGGACACAGGAGGACATGGATGCTGCGTTGGAAGCATTAAGAAATCACGATATGAGTCTTACGAAAGCATCTgCTGCATTTGGAATCCCATCAACGACGCTCTGGCAAAGAGCTCATCGTTTAGGAATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGATGAGAGTTTGAATAATGCATTGGAGGCACTAAGAACAGGAACGATCTCAGCTAACAAGGCATCGAAAGCTTTTGGTATACCTTCCAGTACACTTTACAAAATAGCAAGAAGAGAGGGTATTAGATTAGCTGCACCCTTTAACGCGAGCCCAACTACCTGGACACCTGCCGATTTGGATCGTGCATTAGAAGCAATAAGATCTGGTCAAACCTCTGTTCAGAGAGCTTCCACGGAATTTGGTATTCCTACGGGAACTCTCTATGGTAGGTGTAAGAGAGAAGGGATTGAACTCAGTAGAAGTAATCCCACACCTTGGAGCGAGGATGCTATGACCGAAGCTCTAGAAGCTGTCAgGCTAGGTCACATGAGCATCAATCAAGCAGCTATTCATTACAATTTACCATATTCCTCCTTGTACGGACGTTTTAAAAGAGGCAAATACGAGGAACCGGTAGTCGGTGATTTGTCACAGGACGGTACCAACTCACATTTTCATCAAAGTCCTACGCAGAATCACTCATCTACGATTCCCGATCAAATGTCTTATCAGGGTAGCTGA
- Protein Sequence
- MKISDHNSGSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPPREPGSQRFNFTRLKRPYPRYKRTRTSFEPRATDSRHYDRYKEEEDSDSYHRKNKENRRDWQVEDEECTEVAAAAAVVLESCQRNSNNSTNNANGTNNNNNNGDMFCHTGLGHYGHHPDPEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDTVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGNKSWTQEDMDAALEALRNHDMSLTKASAAFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNSHFHQSPTQNHSSTIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_01233562;