Pdor012079.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000015.1:3359447-3363061[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-13 4.1e-10 38.9 0.0 1 39 288 327 288 331 0.90 2 4 2e-12 2.6e-09 36.4 0.1 2 39 343 380 342 383 0.94 3 4 4.5e-19 5.9e-16 57.6 0.0 1 45 397 442 397 442 0.97 4 4 8.1e-19 1.1e-15 56.8 0.1 1 42 449 491 449 492 0.97
Sequence Information
- Coding Sequence
- atgaatataatgaaaattagtGATCATAATTCGGGGTCGCTTTTGAAAACGGCCGACCAATTGAAAATCAAGGGCCTCTGTGAAGTACCTGAAAGTAAGGACGGGCCACCATCAGTGAGTTTAAGCTCACCACCGAGAGAACCTGGTTCACAAAGATTCAACTTTACCAGGTTGAAGAGACCTTATCCAAGGTATAAGAGAACGAGGACATCATTTGAGCCTCGTGCCACTGATTCTAGGCATTACGATAGAtataaagaggaagaggacAGTGATAGTTACCATCGCAAAAATAAAGAGAATCGCAGAGACTGGCAGGTAGAAGATGAAGAGTGCACGGAGGTGGCAGCGGCAGCAGCAGTAGTTCTGGAAAGCTGCCAACGTAACAGTAACAATAGCACCAACAACGCTAACGGtacaaacaacaacaacaataacgGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCACCCAGATCCTGAGGTAGATCTGCCTCCAGAAACACAGCCCACACCACCTAGCGCTACTTTGGTCGGTACCACCATCACTCATTTGCGAGACTCTGATCATCATTCGACTGAGATACAAAATTGCGATACAGTGAAGATCAAGTTCGAAACCCTGCACACGATGGATTCTTCGGACACGATCGATATCGACAGTCACATGTCGGACAGAGCTAGTGTAAGCTCAAAAAATGCTGCGGACAGCGATAATATGATGATGATAACGCCTGAACTTCTCGGACTCATGCCCTCTGGCAGTTCGATTCATTCGGACTCGGGTGAAAATAATTCGAGAGGTCATTCTGGACAGTCGAGTTCACATCATCATGGTAATAAATCATGGACACAGGAGGACATGGATGCTGCGTTGGAAGCATTAAGAAATCACGATATGAGTCTTACGAAAGCATCTgCTGCATTTGGAATCCCATCAACGACGCTCTGGCAAAGAGCTCATCGTTTAGGAATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGACGAGAGTTTGAATAATGCATTGGAGGCACTAAGAACAGGAACGATCTCAGCTAACAAGGCATCGAAAGCTTTTGGTATACCTTCCAGTACACTTTACAAAATAGCAAGAAGAGAGGGTATTAGATTAGCTGCACCCTTTAACGCGAGCCCAACTACCTGGACACCTGCCGATTTGGATCGTGCATTAGAAGCAATAAGATCTGGTCAAACCTCTGTTCAGAGAGCTTCCACGGAATTTGGTATTCCTACGGGAACTCTCTATGGTAGGTGTAAGAGAGAAGGGATTGAACTCAGTAGAAGTAATCCCACACCTTGGAGCGAGGATGCTATGACCGAAGCTCTAGAAGCTGTCAGGCTAGGTCACATGAGCATCAATCAAGCAGCTATTCATTACAATTTACCATATTCCTCCTTGTACGGACGTTTTAAAAGAGGCAAATACGAGGAACCGGTAGTCGGTGATTTGTCACAGGACGGCACCAACTCACATTTTCATCAAAGTCCTACGCAGAATCACTCATCTACGATTCCCGATCAAATGTCTTATCAGGGTAGCTGA
- Protein Sequence
- MNIMKISDHNSGSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPPREPGSQRFNFTRLKRPYPRYKRTRTSFEPRATDSRHYDRYKEEEDSDSYHRKNKENRRDWQVEDEECTEVAAAAAVVLESCQRNSNNSTNNANGTNNNNNNGDMFCHTGLGHYGHHPDPEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDTVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGNKSWTQEDMDAALEALRNHDMSLTKASAAFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNSHFHQSPTQNHSSTIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_01234262;