Pdom002274.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:1324351-1330281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.063 3.8 7.3 3.1 1 23 345 367 345 367 0.97 2 19 0.031 1.8 8.3 1.2 2 23 402 423 401 423 0.97 3 19 0.00013 0.008 15.7 3.7 1 23 496 518 496 518 0.98 4 19 0.00025 0.015 14.9 0.7 2 23 522 543 521 543 0.96 5 19 0.41 25 4.7 6.4 2 20 597 615 596 617 0.94 6 19 0.0013 0.077 12.6 7.1 1 23 623 645 623 645 0.97 7 19 0.00029 0.017 14.7 0.7 1 21 651 671 651 675 0.92 8 19 0.0011 0.066 12.8 5.4 2 23 745 766 744 766 0.95 9 19 0.00022 0.013 15.0 3.9 1 23 823 845 823 845 0.96 10 19 0.00019 0.011 15.2 0.7 1 20 850 869 850 871 0.94 11 19 0.019 1.2 8.9 0.4 2 23 882 903 882 903 0.97 12 19 2.7e-05 0.0016 17.9 1.7 2 23 942 963 941 963 0.97 13 19 1.8e-05 0.0011 18.5 1.6 1 23 968 990 968 990 0.95 14 19 9.9e-05 0.0059 16.1 2.9 1 23 996 1018 996 1018 0.98 15 19 3.1e-06 0.00019 20.8 0.4 1 23 1034 1056 1034 1056 0.95 16 19 2.5e-07 1.5e-05 24.3 0.6 1 23 1062 1084 1062 1084 0.99 17 19 2.8e-05 0.0017 17.9 0.2 1 23 1090 1112 1090 1112 0.97 18 19 0.0001 0.0061 16.1 4.1 1 23 1118 1140 1118 1140 0.96 19 19 0.0072 0.43 10.3 0.4 1 20 1146 1165 1146 1167 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAGTACGTCGAATCCGCCGCAAAATGAACAAGTAATTGTGTCTGCTGTGGAGATATGTCGTATATGCCTTCATGGTAATCTGGCGATGCGAGACCTCTTTCTGGGAAATGAGATCGCCTCTTTATCGGCCAAAGCGATGAGTTTCGCAAACGTTAAGATGTTACCTGGTGATGGATTACCTCCTCACATTTGTAATGAATGCACGGACAAATTAGAATCTGCATATGAATTTAAACTTCAAGTTGAACAAGCAGACAATGTATTAAGAGAAAAGTTTGATGGCattaaagaagaattattcTTTAACGAAGTTGAAGTACATTTGGAGGTAGATAGAAGCGATGCTATCAATGATATTCATTTGGAATCTCATTACCAACATGAAAATGAAGGATTGACCGAGGAATCAGAAAATGAGAAATCTCTGTTGAAAGAACAATTGGCATTGTTACATGTTGAAAAATTGGTAGAACGAGAACAATTAAGAGAAgaagaaaataattcacaaatattggaacaacaaaatatgataaacaGCTCCCATAGCGAAGAGAAATTCTCAAATGAAATAGACGAAGATACATGTACATTGGTAGATAATGCAGACAATCAAGGAGTATTAAAATCAGACTGCATTAATGAAAACTGTACAGATGCAATTCCTGCTGAAGAACATGATTACATTATGCAGCAAGATTATGTTATGAACGAACAGTTTACTTCTACAGAAtctaaaacattttctaaGGAAAATACAACACAATGCAATGAATCGCTTATGGAATCAAATATACTTGAAACTTGTAAAATAGAAACGGAACATATACCGCTTACAAATAATGACACCCTTGTTGAAAAAGACGTATCTACGactgaaattagaaaaagtaaacgaaGATCATCGCGACGAAATTTTACGAGCGACAGAGATTCTgacgaagaaaattattttgaaaatttgaatcTTAGTTCTCGTCTTAAAAAAGCTCAAGCTGATAAATCagaaaaagtttatttcaTGTGTTATCTTTGtgataaacaatttctttctaaGAACGTATTGAAGGAACATATGCATTCACATGAAGAAATTAGGCGAGCTTTGTCTCTTAAAAAAGTGCCTGAAAAATCACCTAAAGTATCTAATACTTCTCCAAAGATGCCACCGTCTGGTAAAAGGCCTAACAAATGTTCGTATTGTggtaaagaatatttatatataatttcatttaacaaacATCTTAAACgacatgaaaaagaaaaagaaaacgctAAAGATGATTCCATGCCTCTAGAAATATCATTTCACGAAGACGAAAATAGTTTAGGTTTTGATAACCACAGTAATTCGCAACATTCAGATTATGAGTGCAGAAAAAGGACAAAAGGAGAGGAGGAAtcatataatgaaaatgaagaagatgatCAAGAAACAGATAAACATAGAAAGAAATCtcatttggaaatatttgaatGTAACAAATGTTCAGAGAAATTTTATACTAGACGAAGCTTAAGAAAGCATACACTTTCACacgttaatttaaaatgtaatatttgtaatgaaaAGTTTGATGAACTTGagcaattaaaaaatcatcgtGCTAAACATGTAGTGGAAGGTATGTTAATGGATCAGGATTTAGAAGACAATATAGAGCATCATGTAATTAacaaagaagatgaagaagaggatAAAGGAGACAATGAAGACGATTCGgaagttgaaaataatatagaagatgctcaagaaaaagaaatgaaagaatctAAATGTCAACATTGTACATCAACGTGTTCTCACAAGAAATCTCTTTCGAGGCATACTGATATGCAAACAGTTTCAAAATACAACTGTAAAATATGTTGTCAACAGTTTACGAGAAAGGATCACTTACGAAGACACATGGAACAACATGGAAGAATAAAGACTTATAAATGTACGCaatgtaataaaacatttggaAATGAATTGACTTTACGTAATCATCTGATAGCAACTAACCATAAGACTTTTGTTCATGGGCAAGAATATGATCCTAATAAACGTATAAAACGAGTGGCAGCTAAAGCAGCGCAAaagattattgataaaataaaaacagaagatGGTTTGGAAGATTATGAcgaagatgataataatgatttaattgatGTCCATCATAAtcgtaagaatgaaaattctttaaagaaagctaataatagaaaagaattagaatGTGCCACCTGTAATAAAAAGTGCAGCTCAAAACATATGCTGACAAAGCATATGGAGCAACAcgtaaaagatgaaaaagcaGATAAAATGGATAAATTAGACAGATTTAAAAAGCCAcaggagaaaaaagaacaacaaaggATAGGAGGTGGTATGGAATTAAGAAAGGACgaagacgatgacgatgataattcTGACTTCGAAAGTGGTTTGGATTGGTTAATGGATAATCACGAATGCGCaacatgtaaaaaaagatatagtaCGAAAAAATCTTTGTTACGACATCAATTACTTCATGAAGAACCAAACTTTGAATGTGATATATGTAATGTGAAATTTTATCGTAAGGATAAATTGAAAGCTCATTATGATAAATGCTCAGAAAAGAATCCTGATCAGGTAAGAAAGTGCAATATTTGTGGTGAcagttttgaaaataatgaaatacttAGACAACATAGAGCTAAACATGTAACGGAAGGAATTTTAACGGAAGAAGATCTGAGAGAAATTGAACCATGCcctgaagaaagaaagcagGGAGAGAAAATCATTCGGAAAAGAAGGACAGATATAGTGGGCCTTGAATGTACCGAATGTAACAAGCATTATACTTCTAGAAAAGGTTTATTACGTCATATACAAGTACACgaaggtaaaaaatatttgtgtgaCATATGTCCAAAGAAATTCTATAGAAgagaacatttaaaaattcatgtgGCTAAGCATAATATGATCAAACCATATAAATGTACAAGATGCACAAAACGATTTATTAAAGAGGAACAACTTACCAATCATTTATCAAAACACGATAGACcatttaagaaaaacaaagaaacggATAGCTCCAAAAGATTTTTATGTGAAATATGCTCTAAGAGTTTCACGCAATCGACTACTTTAATAGCACATTTGAGAGCTCACAATGGTATAAAGCCATATGTTTGTGAAGTATGTTCTAGACCTTTTACCACAAATGCATACCTAAAAATGCATATGAGGACACATACACAAGAAAGACCATATATCTGTCAGTATTGTTCTAGAGCATTTGCCCGAGCTGATACTCTTGCTAATCACTTGACATCGCATACTGGTGAAGCAAAGTATCATTGCAAGTATTGTCCCAAGAATTTCCGTCGATTGAAATCATTAAAAGAACATGTTTTTATTCATACAGGTCAAAGGCCTTATGCTTGTCCTACGTGTGATCGTAGATTTAATAACAATGGTAGTCGTTATGCGCATAGCAAACGATGTAAGCAAAACTTTTTGCAAAATCAGAATCGTATTCAAACACTTACCGAAGTTCAAACACAACAACCATCGCAGAGAATACAACAGACTCTTACTCAAACGCAAGTTGTTAAATCACAAAACATTAAGACCATTACTATTACTAGACAAGCTGAACCAGTAACTACCCAACAAATAATGCAACATCAAGAAATAGTAATGCCACTTATACTTCCGTTCACTGTAACTCTTGCAGATGTAAGTGACGAAGTAATATTACCCGAaggtacaaaaatatttacaacgtCGTAA
- Protein Sequence
- MDAVEISTSNPPQNEQVIVSAVEICRICLHGNLAMRDLFLGNEIASLSAKAMSFANVKMLPGDGLPPHICNECTDKLESAYEFKLQVEQADNVLREKFDGIKEELFFNEVEVHLEVDRSDAINDIHLESHYQHENEGLTEESENEKSLLKEQLALLHVEKLVEREQLREEENNSQILEQQNMINSSHSEEKFSNEIDEDTCTLVDNADNQGVLKSDCINENCTDAIPAEEHDYIMQQDYVMNEQFTSTESKTFSKENTTQCNESLMESNILETCKIETEHIPLTNNDTLVEKDVSTTEIRKSKRRSSRRNFTSDRDSDEENYFENLNLSSRLKKAQADKSEKVYFMCYLCDKQFLSKNVLKEHMHSHEEIRRALSLKKVPEKSPKVSNTSPKMPPSGKRPNKCSYCGKEYLYIISFNKHLKRHEKEKENAKDDSMPLEISFHEDENSLGFDNHSNSQHSDYECRKRTKGEEESYNENEEDDQETDKHRKKSHLEIFECNKCSEKFYTRRSLRKHTLSHVNLKCNICNEKFDELEQLKNHRAKHVVEGMLMDQDLEDNIEHHVINKEDEEEDKGDNEDDSEVENNIEDAQEKEMKESKCQHCTSTCSHKKSLSRHTDMQTVSKYNCKICCQQFTRKDHLRRHMEQHGRIKTYKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEDDNNDLIDVHHNRKNENSLKKANNRKELECATCNKKCSSKHMLTKHMEQHVKDEKADKMDKLDRFKKPQEKKEQQRIGGGMELRKDEDDDDDNSDFESGLDWLMDNHECATCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILRQHRAKHVTEGILTEEDLREIEPCPEERKQGEKIIRKRRTDIVGLECTECNKHYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRPFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNQNRIQTLTEVQTQQPSQRIQQTLTQTQVVKSQNIKTITITRQAEPVTTQQIMQHQEIVMPLILPFTVTLADVSDEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090138;
- 90% Identity
- iTF_01235175; iTF_01233806; iTF_01232531; iTF_01234496;
- 80% Identity
- -