Pmer010605.1
Basic Information
- Insect
- Polistes metricus
- Gene Symbol
- -
- Assembly
- GCA_010416925.1
- Location
- QUOH01000008.1:6288613-6294527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.083 5.7 7.3 3.1 1 23 356 378 356 378 0.97 2 19 0.04 2.8 8.3 1.2 2 23 413 434 412 434 0.97 3 19 0.00017 0.012 15.7 3.7 1 23 506 528 506 528 0.98 4 19 0.0002 0.014 15.5 0.5 2 23 532 553 531 553 0.96 5 19 0.11 7.7 6.9 5.7 2 21 608 627 607 628 0.94 6 19 0.0017 0.12 12.6 7.1 1 23 634 656 634 656 0.97 7 19 0.00037 0.026 14.7 0.7 1 21 662 682 662 686 0.92 8 19 0.0033 0.23 11.7 5.5 2 23 756 777 755 777 0.95 9 19 0.00028 0.02 15.0 3.9 1 23 833 855 833 855 0.96 10 19 0.00025 0.017 15.2 0.7 1 20 860 879 860 881 0.94 11 19 0.025 1.7 8.9 0.4 2 23 892 913 892 913 0.97 12 19 3.5e-05 0.0024 17.9 1.7 2 23 952 973 951 973 0.97 13 19 2.3e-05 0.0016 18.5 1.6 1 23 978 1000 978 1000 0.95 14 19 0.00013 0.0089 16.1 2.9 1 23 1006 1028 1006 1028 0.98 15 19 4.1e-06 0.00028 20.8 0.4 1 23 1044 1066 1044 1066 0.95 16 19 3.3e-07 2.3e-05 24.3 0.6 1 23 1072 1094 1072 1094 0.99 17 19 3.6e-05 0.0025 17.9 0.2 1 23 1100 1122 1100 1122 0.97 18 19 0.00013 0.0092 16.1 4.1 1 23 1128 1150 1128 1150 0.96 19 19 0.0094 0.65 10.2 0.4 1 20 1156 1175 1156 1177 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAGTACGTCGAATCCGTCACAAAGTGAACAAGAAATTGTGTCTGCTGTGGAGATATGTCGTATATGTCTTCATGGTAACCTGGCGATGCGAGACCTCTTCCTGGGAAATGAGATCGCCTCTTTATCGGCTAAAGCGATGAGTTTCGCAAACGTTAAGAGTTATTTCCAGAGTTTTTCTACATTTACACAGATGTTACCTGGCGATGGCTTACCTCCTCACATTTGTAATGAATGCACGGATAAATTAGAATCTGCATATGAATTTAAACTTCAAGTCGAACAAGCAGACAATGTATTAAGAGAAAAGTTTGATGGCATTAAAGAAGAATTATTCTTTAACGAAGTTGAAGTACATTTGGAAGTAGATAGAAACGAAGCTATCAATGATATTCATTTGGAATCTCATTACCAACATGCTAATGAAGGATTGACCGAGGAATCAGAAAGTGAAAAATCTCTGTTGAAAGAACAATTGGCATTGTTACAAGTTGAAAAATTGGTAGAACGAGAACAATTAAGAGAAGaagaaaataattcacaaaTGTTGGAACAACAAAATATGATAAACAGCTCCCATAACGATGACAAATTCTCAAATGAAATAGACGAAGATACCTGTACATTGGTAGATAGTGCAGACAATCAAGAAGTATTAAAACCAGTCTGCATTAATGAAAACTGTACAGATGCAATTCCTGCTGAAGAACATGATTACATTATGCAGCAAGATTATGTTATGAACGAACAGTTTGCTTCGTCAAAGTCTGAAGAATTTTCTAAGGAAAATACAACACAATGCAGTGAATCGCTTATGGAATCAAATATActtgaaaattgtaaaatagaaACTGAACATATACCCCTTGCAAATAGTGACACGCTTGTAGAAAAAGATGTATCTACGactgaaattagaaaaagtaaaCGAAGATCATCGCGACGAAATTTTACAAGCGACAGAGATTCcgatgaagaaaattattttgaaaatttgaatCTTAGTTCTCGTCTTAAAAAAGCACAAGCTGATAAAtcagaaaaaatttatttcatgtgTTATCTTTGTgataaacaatttctttctaaGAACGTTTTGAAGGAACATATGCATTCCCACGAAGAAATTAGGCGAGCTTTGTCTCTTAAAAAAGTGCCTGAAAAATCACCTAAAGTATCTAATACTACCCCAAAGATGCCACCGTCTGGAAAAAGGCCTAACAAGTGTTCGTATTGCggtaaagaatatttatatataatttcatttaacaaaCACCTTAAACgacatgaaaaagaaaaagaaaacgctaAAGATGATTCCATGCCTCTAGAAATATCATTTCACGAAGACGAAAATAGTTTAGGTTTTGATAATCACAGTAATTCGCAACATTCAGATTATGAGTGTAGAAAAAGGACAAAACGAGAAGAATCATATaacgaaaatgaagaagatgatCAAGAAACAGATAAACATAGAAAGAAACCTCATTTGGAGATATTTGAATGCAACAAATGTTCAGAGAAATTTTATACTAGACGAAGCTTAAGAAAGCATACACTTTCACacgttaatttaaaatgtaatatctgTGACGAAAAGTTTGATGAACttgaacaattaaaaaatcatcgtGCTAAACATGTAGTGGAAGGTATGTTAATTGATCAAGATTTAGaagataatatagaaaatcatgtaattaacaaagaagatgaagaacaAGATATTAGAGGAGACAATGAAGAAGATTCGgaagttgaaaataatatagatgATGCTCaagataaagaaatgaaagaatctAAATGTCAACATTGTACATCAACATGTTCTCACAAGAAATCTCTTTCAAGGCATATTGAAATGCAAACTGTTTCAAAATACAACTGTAAAATATGTTGTCAACAATTCACGAGAAAGGATCATTTACGAAGACACATGGAACAACATGGAAGAATAAAGACTTATAAATGTACGCAATGTAATAAAACATTTGGAAATGAATTGACTTTACGTAATCATCTAATAGCAACTAACCATAAGACTTTTGTTCATGGGCAAGAATATGATCCTAATAAACGTATAAAACGAGTAGCAGCTAAAGCAGCACAAAagattattgataaaataaaaacagaagaTGGTTTGGAAGATTATGACGAAGATGATAATAACGATTTAATTGATGTCCATCATAATCGTAAGaatgaaaattctttaaagaaaggtaataatagaaaagaattagaatgtgccacttgtaataaaaaatgtaattcgaAACATATGCTGACAAAGCATATGGAGCAACAcgtaaaagatgaaaaagcAGAAAAAATGGATAGATTAGACAGATTTAAAAAGCcacaggaaaaaaaagaacaacaaaggATAGGTGGCATGGAATTAAGAAaggacgaagacgaagacgatgaTAATTCTGACTTCGAAAGTGGACTGGACTGGCTAATGGATAATCACGAATGCGCAAcatgtaaaaaaagatatagtaCGAAAAAATCCTTGTTACGACATCAATTACTTCATGAAGAACCAAACTTCGAATGTGATATATGTAATGTGAAATTTTATCGTAAAGATAAATTGAAAGCTCATTATGATAAATGCTCAGAAAAGAATCCTGACCAGGTAAGAAAGTGCAATATTTGTGGTGAcagttttgaaaataatgaaatacttCGACAACATAGAGCTAAACATGTAACAGAAGGAATTTTAACGGAAGAAGATTTGAGAGATATTGAACCATGCcctgaagaaagaaagcaaggagagaaaattattcgGAAAAGAAGGACAGATATAGTAGGCCTTGAATGTACAGAATGTAACAAACATTATACTTCTAGAAAAGGTTTATTACGTCATATACAAGTACATGaaggtaaaaaatatttgtgtgaCATATGTCCAAAGAAATTCTATAGAAgagaacatttaaaaattcatgtGGCTAAGCATAATATGGTCAAACCATATAAATGTACAAGATGCACAAAACGATTTATTAAAGAGGAACAACTTACCAATCACTTATCAAAACACGATAGACcatttaagaaaaacaaagaaacggATAGCTCCAAAAGATTTTTATGTGAAATATGCTCTAAGAGTTTCACCCAATCGACTACTTTAATAGCACATTTGAGAGCTCACAATGGTATAAAGCCATATGTTTGTGAAGTATGTTCTAGACCTTTTACCACAAATGCGTACCTAAAAATGCATATGAGGACACATACACAGGAAAGACCATATATCTGTCAGTACTGTTCTAGAGCATTTGCCCGAGCTGATACTCTTGCTAATCATTTGACATCGCATACTGGTGAAGCAAAGTATCATTGCAAGTATTGTCCCAAGAATTTCCGTCGATTGAAGTCGTTAAAAGAACATGTTTTTATTCATACAGGTCAAAGACCTTATGCTTGTCCTACGTGTGATCGTAGATTTAATAACAACGGTAGTCGTTATGCACATAGCAAACGATGTAAACAAAACTTCTTGCAAAATCAGAATCGTATTCAAACACTTACCGAAGTTCAAACACAGCAACCATCGCAGAGAATACAACAGACTCTTGCTCAAACGCAAGTTGTTAAAGCACAAAACATTAAGACCATTACTATTACTAGACAAGCTGAACCAGTAACTACCCAACAAATAATGCAACATCAAGAAATATTAATGCCACTTATACTTCCGCTCACTGTAACTCTCGCAGATGTAGGTGATGAAGTAATATTACCCGAaggtacaaaaatatttacaacgtCGTAA
- Protein Sequence
- MDAVEISTSNPSQSEQEIVSAVEICRICLHGNLAMRDLFLGNEIASLSAKAMSFANVKSYFQSFSTFTQMLPGDGLPPHICNECTDKLESAYEFKLQVEQADNVLREKFDGIKEELFFNEVEVHLEVDRNEAINDIHLESHYQHANEGLTEESESEKSLLKEQLALLQVEKLVEREQLREEENNSQMLEQQNMINSSHNDDKFSNEIDEDTCTLVDSADNQEVLKPVCINENCTDAIPAEEHDYIMQQDYVMNEQFASSKSEEFSKENTTQCSESLMESNILENCKIETEHIPLANSDTLVEKDVSTTEIRKSKRRSSRRNFTSDRDSDEENYFENLNLSSRLKKAQADKSEKIYFMCYLCDKQFLSKNVLKEHMHSHEEIRRALSLKKVPEKSPKVSNTTPKMPPSGKRPNKCSYCGKEYLYIISFNKHLKRHEKEKENAKDDSMPLEISFHEDENSLGFDNHSNSQHSDYECRKRTKREESYNENEEDDQETDKHRKKPHLEIFECNKCSEKFYTRRSLRKHTLSHVNLKCNICDEKFDELEQLKNHRAKHVVEGMLIDQDLEDNIENHVINKEDEEQDIRGDNEEDSEVENNIDDAQDKEMKESKCQHCTSTCSHKKSLSRHIEMQTVSKYNCKICCQQFTRKDHLRRHMEQHGRIKTYKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEDDNNDLIDVHHNRKNENSLKKGNNRKELECATCNKKCNSKHMLTKHMEQHVKDEKAEKMDRLDRFKKPQEKKEQQRIGGMELRKDEDEDDDNSDFESGLDWLMDNHECATCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILRQHRAKHVTEGILTEEDLRDIEPCPEERKQGEKIIRKRRTDIVGLECTECNKHYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLTNHLSKHDRPFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNQNRIQTLTEVQTQQPSQRIQQTLAQTQVVKAQNIKTITITRQAEPVTTQQIMQHQEILMPLILPLTVTLADVGDEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090138;
- 90% Identity
- iTF_01233140;
- 80% Identity
- -