Pdor002085.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000001.1:5830880-5835191[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.083 5.8 7.3 3.1 1 23 345 367 345 367 0.97 2 19 0.04 2.8 8.3 1.2 2 23 402 423 401 423 0.97 3 19 0.00017 0.012 15.7 3.7 1 23 495 517 495 517 0.98 4 19 0.0002 0.014 15.5 0.5 2 23 521 542 520 542 0.96 5 19 0.11 7.8 6.9 5.7 2 21 597 616 596 617 0.94 6 19 0.0017 0.12 12.6 7.1 1 23 623 645 623 645 0.97 7 19 0.00038 0.026 14.7 0.7 1 21 651 671 651 675 0.92 8 19 0.0033 0.23 11.7 5.5 2 23 745 766 744 766 0.95 9 19 0.00028 0.02 15.0 3.9 1 23 822 844 822 844 0.96 10 19 0.00025 0.017 15.2 0.7 1 20 849 868 849 870 0.94 11 19 0.025 1.8 8.9 0.4 2 23 881 902 881 902 0.97 12 19 3.5e-05 0.0024 17.9 1.7 2 23 941 962 940 962 0.97 13 19 2.3e-05 0.0016 18.5 1.6 1 23 967 989 967 989 0.95 14 19 0.00013 0.0091 16.1 2.9 1 23 995 1017 995 1017 0.98 15 19 4.1e-06 0.00029 20.8 0.4 1 23 1033 1055 1033 1055 0.95 16 19 3.3e-07 2.3e-05 24.3 0.6 1 23 1061 1083 1061 1083 0.99 17 19 3.6e-05 0.0025 17.9 0.2 1 23 1089 1111 1089 1111 0.97 18 19 0.00013 0.0093 16.1 4.1 1 23 1117 1139 1117 1139 0.96 19 19 0.0094 0.66 10.3 0.4 1 20 1145 1164 1145 1166 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAGTACGTCGAATGCGTCACAAAGTGAACAAGAAATTGTGTCTGCTGTGGAGATATGTCGTATATGTCTTCATGGTAACCTGGCGATGCGAGACCTCTTCCTGGGAAATGAGATCGCCTCTTTATCGGCTAAAGCGATGAGTTTCGCAAACGTTAAGATGTTACCTGGCGATGGCTTACCTCCTCACATTTGTAATGAATGCACGGATAAATTAGAATCTGCATATGAATTTAAACTTCAAGTCGAACAAGCAGACAATGTATTAAGAGAAAAGTTTGATGGCATTAAAGAAGAATTATTCTTTAACGAAGTTGAAGTACATTTGGAAGTAGATAGAAACGAAGCTATCAATGATATTCATTTGGAATCTCATTACCAACATGCTAATGAAGGATTGACCGAGGAATCAGAAAGTGAAAAATCTCTGTTGAAAGAACAATTGGCATTGTTACAAGTTGAAAAATTGGTAGAACGAGAACAATTAAGAGAAGaagaaaataattcacaaaTGTTGGAACAACAAAATATGATAAACAGCTCCCATAACGATGTCAAATTCTCAAATGAAATAGACGAAGATACCTGTACATTGGTAGATAATGCAGACAATCAAGAAGTATTAAAACCAGACTGTATTAATGAAAACTGTACAGATGCAATTCCTGCTGAAGAACATGATTACATTATGCAGCAAGATTATGTTATGAACGAACAGTTTGCTTCATCAAAGTCTGAAGAATTTTCTAAGGAAAATACAACACAATGCAGTGAATCGCTTATGGAATCAAATATActtgaaaattgtaaaatagaaaCTGAACATATAGCCCTTGCAAATAGTGACACGCTTGTTGAAAAAGATGTATCTACGActgaaattagaaaaagtaaacgaaGATCATCGCGACGAAATTTTACAAGCGACAGAGATTCcgatgaagaaaattattttgaaaatttgaatCTTAGTTCTCGTCTTAAAAAAGCACAAGCTGATAAATcagaaaagatttatttcatgTGTTATCTTTGTgataaacaatttctttctaaGAACGTTTTGAAGGAACATATGCATTCCCACGAAGAAATTAGGCGAGCTTTGTCTCTTAAAAAAGTGCCTGAAAAATCACCTAAAGTATCTAATACTACCCCAAAGATGCCACCGTCTGGAAAAAGGCCTAACAAGTGTTCGTATTGTggtaaagaatatttatatataatttcatttaacaaaCACCTTAAACgacatgaaaaagaaaaagaaaacgctaAAGATGATTCCATGCCTCTAGAAATATCATTTCACGAAGATGAAAATAGTTTAGGTTTTGATAATCACAGTAATTCGCAACATTCGGATTATGAGTgtagaaaaaggacaaaacgAGAAGAATCATATAACGAAAATGAGGAAGATGATCAAGAAACAGATAAACATAGAAAGAAACCTCATTTGGAGATATTTGAATGCAACAAATGTTCAGAGAAATTTTATACTAGACGAAGCTTAAGAAAGCATACACTTTCACAcgttaatttaaaatgtaatatctgTGACGAAAAGTTTGATGAACttgaacaattaaaaaatcatcgtgCTAAACATGTAGTGGAAGGTATGTTAATTGATCAAGATTTAGaagataatatagaaaatcatGTAATTAacaaagaagatgaagaacaAGATATTAGAGGAGACAATGAAGACGATTcggaaattgaaaataatatagatgATGCTcaagataaagaaatgaaagaatctAAATGTCAACATTGTACATCAACATGTTCTCACAAGAAATCTCTTTCAAGGCATATTGAAATGCAAACAGTTTCAAAATACAACTGTAAAATATGTTGTCAACAATTTACGAGAAAGGATCATTTACGAAGACACATGGAACAACATGGAAGAATAAAGACTTATAAATGTACGCAatgtaataaaacatttgGGAATGAATTGACTTTACGTAATCATCTAATAGCAACCAACCATAAGACTTTTGTTCATGGGCAAGAATATGATCCTAATAAACGTATAAAACGAGTAGCAGCTAAAGCAGCACAAAagattattgataaaataaaaacagaagatGGTTTGGAAGATTATGAcgaagatgataataatgatttaattgaTGTCCATCATAATCGTaagaatgaaaattctttaaagaaaggtaataatagaaaagaattagaaTGTGCcacttgtaataaaaaatgtaattcgaAACATATGCTGACAAAGCATATGGAGCAACAcgtaaaagatgaaaaagcagaaaaaatGGATAGATTAGACAGATTTAAAAAGCCacaggagaaaaaagaacaacaaaggATAGGTGGCATGGAATTAAGAAaggacgaagacgaagacgatgaTAATTCTGACTTCGAAAGTGGTCTGGACTGGCTAATGGATAATCACGAATGTGCAacatgtaaaaaaagatatagtaCGAAAAAATCTTTATTACGACATCAATTACTTCATGAAGAACCAAACTTCGAATGTGATATATGTAATGTGAAATTTTATCGTAAAGATAAATTGAAAGCTCATTATGATAAATGCTCAGAAAAGAATCCTGACCAGGTAAGAAAGTGCAATATTTGTGGTGAcagttttgaaaataatgaaatacttCGACAACATAGAGCTAAACATGTAACAGAAGGAATTTTAACGGAAGAAGATTTGAGAGATATTGAACCATGTcctgaagaaagaaagcagggagagaaaattattcgtaaaagaAGGACAGATATAGTAGGCCTTGAATGTACAGAATGTAACAAACATTATACTTCTAGAAAAGGTTTATTACGTCATATACAAGTACATGaaggtaaaaaatatttgtgtgaCATATGTCCAAAGAAATTCTATAGAAgagaacatttaaaaattcatgtGGCTAAGCATAATATGATCAAACCATATAAATGTACAAGATGCACAAAACGATTTATTAAAGAGGAACAACTTACCAATCACTTATCAAAACACGATAGACcatttaagaaaaacaaagaaacggATAGCTCCAAAAGATTTTTATGTGAAATATGCTCTAAGAGTTTCACACAATCGACTACTTTAATAGCACATTTGAGAGCTCACAATGGTATAAAGCCATATGTTTGTGAAGTATGTTCTAGACCTTTTACTACAAATGCGTACCTAAAAATGCATATGAGGACACATACACAAGAAAGACCATATATCTGTCAGTACTGTTCGAGAGCATTTGCCCGAGCTGATACTCTTGCTAATCATTTGACATCGCATACTGGTGAAGCAAAGTATCATTGCAAGTATTGTCCCAAGAATTTCCGTCGATTGAAGTCGTTAAAAGAACATGTTTTTATTCATACAGGTCAAAGACCTTATGCTTGCCCTACGTGTGATCGTAGATTTAATAACAACGGTAGTCGTTATGCGCATAGCAAACGATGTAAACAAAACTTTTTGCAAAATCAGAATCGTATTCAAACACTTACCGAAGTTCAAACACAGCAACCATCGCAGAGAATACAACAGACTCTTGCTCAAACGCAAGTTGTTAAAGCACAAAACATTAAGACCATTACTATTACTAGACAAGCTGAACCAGTAACTACCCAACAAATAATGCAACATCAAGAAATATTAATGCCACTTATACTTCCGCTCACTGTAACTCTCGCAGATGTAGGTGATGAAGTAATATTACCCGAaggtacaaaaatatttacaacgtCGTAA
- Protein Sequence
- MDAVEISTSNASQSEQEIVSAVEICRICLHGNLAMRDLFLGNEIASLSAKAMSFANVKMLPGDGLPPHICNECTDKLESAYEFKLQVEQADNVLREKFDGIKEELFFNEVEVHLEVDRNEAINDIHLESHYQHANEGLTEESESEKSLLKEQLALLQVEKLVEREQLREEENNSQMLEQQNMINSSHNDVKFSNEIDEDTCTLVDNADNQEVLKPDCINENCTDAIPAEEHDYIMQQDYVMNEQFASSKSEEFSKENTTQCSESLMESNILENCKIETEHIALANSDTLVEKDVSTTEIRKSKRRSSRRNFTSDRDSDEENYFENLNLSSRLKKAQADKSEKIYFMCYLCDKQFLSKNVLKEHMHSHEEIRRALSLKKVPEKSPKVSNTTPKMPPSGKRPNKCSYCGKEYLYIISFNKHLKRHEKEKENAKDDSMPLEISFHEDENSLGFDNHSNSQHSDYECRKRTKREESYNENEEDDQETDKHRKKPHLEIFECNKCSEKFYTRRSLRKHTLSHVNLKCNICDEKFDELEQLKNHRAKHVVEGMLIDQDLEDNIENHVINKEDEEQDIRGDNEDDSEIENNIDDAQDKEMKESKCQHCTSTCSHKKSLSRHIEMQTVSKYNCKICCQQFTRKDHLRRHMEQHGRIKTYKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEDDNNDLIDVHHNRKNENSLKKGNNRKELECATCNKKCNSKHMLTKHMEQHVKDEKAEKMDRLDRFKKPQEKKEQQRIGGMELRKDEDEDDDNSDFESGLDWLMDNHECATCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILRQHRAKHVTEGILTEEDLRDIEPCPEERKQGEKIIRKRRTDIVGLECTECNKHYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRPFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNQNRIQTLTEVQTQQPSQRIQQTLAQTQVVKAQNIKTITITRQAEPVTTQQIMQHQEILMPLILPLTVTLADVGDEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090138;
- 90% Identity
- iTF_01233140;
- 80% Identity
- -