Pdom002385.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- egg
- Assembly
- GCA_001465965.1
- Location
- NW:201026-206725[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2 2.9e+03 -2.9 0.1 20 56 568 603 565 610 0.71 2 2 8.2e-13 1.9e-09 36.1 0.1 5 70 634 693 631 699 0.85
Sequence Information
- Coding Sequence
- ATGGAAGTAATCGAATTAGTTTCAGACGAAGAAGTAtccaataataaaatgaaaaatccaaAGATTTCTAATACATGTAATTCTAATTGTATAAACTTTAAATGTAATTCAGGAATTGATATGAAACCTGCACCATCCTTTGCATGTGCATATTATGGTGTCAATacagaaaagaaaaccaaacCTAAACTAATATGCAAACAATGTTTTGATATAGCTTTGGAACATCAGAAAAAATTAGTAGCAGCATTAATGGAACAAAAATCTTTATTGAAATGCGATTTTCCAGATCTAACGGTCGAAGTAGAAATTTCCGACAGTGATGAATCCGAcgacgagaagaaaaaagaaacagatgaCAATgaTACTTATGTACCAACGGAAGTACTTTTGGATTTAGAAGAAAAGTTGGATATAACACTGCAATCACTTTTTAAACAATACAATGTGGATTATCAAATAGGGGAAGCAAAAAATCTATTGACACAACAGTGGAAAGAAATTGATGaaaaaaataaacttattgaTGATGAGATCAAAGCCTTAACTACTCAATTGGATACATTAAGAAATAGTTTATACGAAGACTTCAGGCCACAAATTCGAATGATTCAGGAACTTCAAATAGGTATGgattatgaagaaaatatgaCTTATCCACTTGTAGCGACTAAAAAAGTCACTCAAGTACGTAATTCGCCTTCCAAATTGCAACAAGAGACTCAACCAGATATATTACCCATTGAAAGAGATACTAAACAAATAGTTACTTTGAATTTACCTCCTACTGGTCCTCTTGTTAGACCACAACCAGAACCTGACACCATAATCTATGTCATGAAACATCCTCTCATGAGATGGATTAAAGGAAAGgtAATAAATGTAGTAACCAAAAATCCATTACTGTGTCGAGTAAGATTATTCCAAAAAAAGTATAGTTCGACTATCAAGTCGGTCTCTGGCAAACAAATTGCTGTAGCAGTACCCAGTAAAGTTTTAATTCCTGTCGGTACAAGAGTTGTTGCTGTCTTTCATGATGtagaacattttgaaaaatatcgagAAAAAAACGAATCTAGCAATTTTTATAGCGGTGTCATTGCAGAACCTCCTAAATCTACAAATAAGTACAGATATTTGGTGTTTTTTGACGATGGATATGTACAATACGTTACGCACAAAGATATCTTGATAGTATCTGAAAGTTCTCCTAGAGTTTGGGAAGATGTAGCCAGTGAGTCGCgtgattttgtaaaaaaatatatggaaaCGTATCCGGAAAGACCGAtggtaaaattacaaaatggtCAGATAGTAAAAACCGAATGGAATGGTAAATGGTGGGTCGCAAGGGTTAAACAAGTAGATGCGAGTCTTGTGCAAATGCAATTTGATGCAGATCAAAGAACAGAATGGATTTATAGAGGCTCTGCCAGATTAGGACCTTTATATGTTGAACTATTAAAAGCAAATGCAAGGCAGCAGGGTCATCATACTTCTCTCAATGCACCTAGTCGTCATCGTATTCCCGTTATTTCTAATaaaaacaatttaccTTACGTGGAATATACTTCCAATGTAGACATAGATGAGGAAATCAAAAATATCCTTAATGATAAGCCATCGGACActgaatttaatgaaaatcgaAGTGTCAATGCACCAAAATCAACAATAGCACCATTGCAGTCTCGTGCTGTAGCTAAAAAAAGTACTAGCAAAAAATCAGTTGTGACAGATGTAATTCCTTGCAATCCTACtttagaaatgaaatcttCTCATAGCATTGtttaCTATCAGACgcaaaatgaaattcaaacgaaaaaattcGTTCCTCATAAATGTGGACCGAAATGCATACAAAGTATATCTTTCACACCAGATGATTTGAAAGGTTACTCACCCCTTTCGATTCCTTTACTATGTGGTTGGAATAGACAATTATGTAAATTTCCAAAATGCAAAAAAGTTATATTGTATCAAGCACCATGTGGTGTAAGATTACGAAACATGGAAGaacttcatttttatcttcgtcAAACTAATAGTCCAATGTCTgtagatttatttgattttgatttttgggTCCATTGTTTGGCAGAGTTTGTTTTAGATAAATgctttgttaatattaaaGATCTTAGTTATGGAATAGAAAATGTGCCAATACCTTGTGTGAATGAATTAGATCATGCTTTACCCGATACTATTAGATATAGTACTCAAAGAGAACCTACAGAAggagtaaatttaaatttagatcCAAATTTTCTTTGTAGTTGTGATTGCGAAGATGATTGTCAGgataaaacaaaatgtcaaTGTTGGCAATTGACAATACAGGGAGCAACTTTAGGGGGAAGAGTTCCAAATACTGCTGTTGGTTACGTTTATAAACGTTTACCAGAACCAGTGACAACTGGTATTTACGAATGTAATTCTGGATGTAAGTGTGCCGTAAAAACTTGTTTAAATAGAGTTGTACAACATCcacttaaattaaaattacaagttTTCAAAACGGCACCTCGAGGTTGGGGTATAAGATGTCTTACTGACATTCCGTTAGGttcttttatatgtatttatgctGGACGTTTATTAACTGAACAGGGTGCAAATGAAGGTGGAAAAAACTATGGAGATGAATATCTTGCAGAGTTAGATTATGTTGAAGTTGTGGAAGGGATGAAAGAAGGTTACGAAAGTGATGTTTTTGATCCAGAAATACCTTTAACTCctgtgaaagaaaagaaaaaagaacatggTGCAAGTGACGAAGATTATAACGCTAAAAATACTACAAATGATTCTGATGAAGATTTTAACATTAGTAAATACGTCAATTTTTCTGTAGATTCGGACGAATCTTCTATCAGaAAACGCCTTAGAAAACGTAAAAGAGGTGAATCTAATTTAGATGGTTCAGAGGAAAACAGCGAAGATGGAAGTATTACAAAAAGTTTAGAAAATCTTATTCCTAAATCATCTTCACTTGAAAATCGTACAATGGATCACGAAACGGTGACGATAagcgacgaagaagaaaatcgaAGTAGTAGACGTGTACCAAGTAGATTTGATCCATCGATAGAACCTTTACAATTAGATAGACCAAAGTTTAAATCTGTAAGAGATTTTTATGGAGAGGATGAAGCTGTTTACATCATGGATGCCAAAACAACAGGAAATATAGGCCGTTACTTAaatCATTCCTGTGATCCAAACGTTTTCGTTCAAAACGTATTTGTAGATACGCATGATGTACGTTTCCCATGGGTGGCATTTTTTGctttgaattatattcgaGCAGGCCAAGAATTAACATGGAATTATAGTTATGACGTAGGTAGTATACCGGgtaaagtaattatttgtaaatgcgGTGCATCAAATTGCAGAGGCCGACTACTTTAA
- Protein Sequence
- MEVIELVSDEEVSNNKMKNPKISNTCNSNCINFKCNSGIDMKPAPSFACAYYGVNTEKKTKPKLICKQCFDIALEHQKKLVAALMEQKSLLKCDFPDLTVEVEISDSDESDDEKKKETDDNDTYVPTEVLLDLEEKLDITLQSLFKQYNVDYQIGEAKNLLTQQWKEIDEKNKLIDDEIKALTTQLDTLRNSLYEDFRPQIRMIQELQIGMDYEENMTYPLVATKKVTQVRNSPSKLQQETQPDILPIERDTKQIVTLNLPPTGPLVRPQPEPDTIIYVMKHPLMRWIKGKVINVVTKNPLLCRVRLFQKKYSSTIKSVSGKQIAVAVPSKVLIPVGTRVVAVFHDVEHFEKYREKNESSNFYSGVIAEPPKSTNKYRYLVFFDDGYVQYVTHKDILIVSESSPRVWEDVASESRDFVKKYMETYPERPMVKLQNGQIVKTEWNGKWWVARVKQVDASLVQMQFDADQRTEWIYRGSARLGPLYVELLKANARQQGHHTSLNAPSRHRIPVISNKNNLPYVEYTSNVDIDEEIKNILNDKPSDTEFNENRSVNAPKSTIAPLQSRAVAKKSTSKKSVVTDVIPCNPTLEMKSSHSIVYYQTQNEIQTKKFVPHKCGPKCIQSISFTPDDLKGYSPLSIPLLCGWNRQLCKFPKCKKVILYQAPCGVRLRNMEELHFYLRQTNSPMSVDLFDFDFWVHCLAEFVLDKCFVNIKDLSYGIENVPIPCVNELDHALPDTIRYSTQREPTEGVNLNLDPNFLCSCDCEDDCQDKTKCQCWQLTIQGATLGGRVPNTAVGYVYKRLPEPVTTGIYECNSGCKCAVKTCLNRVVQHPLKLKLQVFKTAPRGWGIRCLTDIPLGSFICIYAGRLLTEQGANEGGKNYGDEYLAELDYVEVVEGMKEGYESDVFDPEIPLTPVKEKKKEHGASDEDYNAKNTTNDSDEDFNISKYVNFSVDSDESSIRKRLRKRKRGESNLDGSEENSEDGSITKSLENLIPKSSSLENRTMDHETVTISDEEENRSSRRVPSRFDPSIEPLQLDRPKFKSVRDFYGEDEAVYIMDAKTTGNIGRYLNHSCDPNVFVQNVFVDTHDVRFPWVAFFALNYIRAGQELTWNYSYDVGSIPGKVIICKCGASNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232402;
- 90% Identity
- iTF_01234346;
- 80% Identity
- -