Pcan009159.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- lov
- Assembly
- GCA_001313835.1
- Location
- NW:33369-41918[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-18 2.1e-15 55.2 0.0 1 44 607 650 607 651 0.96
Sequence Information
- Coding Sequence
- ATGTCTCGCAACCGCGGGGCGTACATGTGTGCATGGAAGAGGAAAACGATCGCGCCACCGGTAGAAACGAAGGAGAACGAGGCGGAGGTGGAAGGCCAGGTTGCCTCCGCCAACAACGGCGCCGAGGCCGTTGAAAAAATGTCCAGCACTGCGGAAAGTCCCGATGGGATGGCTTTTCAATCACACTTCTCCCTTCGATGGAACAATCATCAAGCTCATATACTTCAGTCCTTCGAAGCTCTTTTGCACCAGGAGGAGTTCGTCGACGTTACCTTGGTTTGCGCCGACACTAGTTACAGGGCTCACAAGGTCGTCCTCAGCGCTTGCAgCCCCTTCTTCGAGAAAATATTCGCGGCCCATCCGTGCAAGCATCCGGTGATTGTACTCAAGGATTTTCCCGGTTCGGAAATCTCGGCATTGATCGACTTTATGTATCGCGGAGAAGTGCAAGTCAGTCGAGAAGAATTGCCGGGGTTGATAAAAGCGGCGGATAATCTGCAGATTCGAGGATTGACCTCGACGGAACTAAGGGAAGCATCACCGTCGGATACCCAAATGGCCGATTTCAATTTCGGTGAGCCATCTACGCCGGAGGAGGCTAGGCAGGATACTCCCGAAGAGGAGGACAATGCATCGGAAATAGAAACGATCGCGACGTCCAAACGAACGATCTACCACCCTTCGGGGGACCATCGCGATAGATTACCGCACATGACTCATTTGAACTTCGGTGTACGGGACCTAAGAGAAACCTGTAGTTCCCCGTTGATGCCGCGCAGAAAGCAAGCACGACCACGGCGAAGATCTGGGGAATTGGTACCACAAGACTTGAGCCGACCTCATCCACCGCGAAGTCTAAGTCCACCGTTTACCTCTTTGAACCTTTCGAATAATCACCAACAACACCAGAATCAGCAGCTAAATCAGCACCATTTGCAACTTTCCGCGAGCGCTTCGAATCAACAACAAGAACAGGAGGAAATGGCGGAGAATTTATCGATAAAGAGAACCCTCTCGCCGATTGGTCAAGAACAACTGCATCAACAATATCATCATATTAATCAACAATTACATCAGGTTAAAACCGAAAGTAGCGAAACAGCGAGTAGTCCACGGGGTTCGCCGCTTACCGGCACGAGTCTTCTCCATCCCGACGGTTCTTTTCAAGATATTCCATCGGTGGCGGCCGCGGCCGTCGTCGGTATACCTGCCATGTCGGCCGCGTTATCCTTGACGTCGCCCCATCATCACAGCGAGTACCTGACGAGTATGGGCCAATTAGCGGTACGTTGGCTTCCGAATCATCCCCAGAGCCAACTACCACCGCCGCCAACGCAAAGTCATCATTCGCGGCCCGATAGTCCGCTTGGCACCGCTAGAACTTCTCACACctatcaacaacaacagcaacaacaacagcaacagcagcaacaacaacaacaacaacaacaacaacagcagcagcagcagcaacaacaacaacaacaacaacagcaacaagaATCATCGCGACGAGGTTCGATTGCATCGATGTTTCCTCTCGATACCGTTGCTTCTTTGAGCGGGCTCTTTTCTCCTGGCGCCGGAATCGACAGGGGATCACTTTTAGCGGATCTTCACGATGGCTTAAAGCCGGAACAGTTGCACGGATTGTTCGTTCCGGCCGCCTTAACGAGTCATCCACCTAGCAAGAAGAGGAAGCTCAGAGCCGAGGGCGATCCACCCAGAAGGTGGACCGATCAAGGAGGACGCAACGTGCCCGTTGGCAGACCCAAGGGTCAACACAGCGCACCACGGGGCGGTCCACCGAGGTCTTGGACGAATGCCGAGCTGACCGAAGCGCTTCAACACGTGTGGAACAAGAAAATGACGACGTCCCAGGCAAGCCGGATATTCGGCATACCGTACAACAGTTTGTTGATGTACGTGCGCGGTAAATACGGGAAAAGTTTGAAGCTTGAGCAATTGAGAAGAGATTGCACCGGTGCGACTACCGGCGACGCAGTCATGAATTCTTTGAACAATAACGTGAAAACCGTTCAACAACCACCGGCGCAACTGGGCCATCCGCTCGTCGGCCTTCCACCCCATCCAGCCGACGACAGTGGATTTCCGCATCACTCGCTTCTCGGCTCTAACCTTTCTCAAGCTTATTACCCGGATTTCGCTAGCGCGACCTTCCCCGTGCCGGTTAACATGATACATCTTTTACCTCCGAGCGAGCAGAAGGTTTACGAGCACCCCGGAAGCAGTAACAACAATGTCAGCGTAGGCGGCAATGGAAGTTCTGGTACCACTGGCAATGGTAACACCGCGGGAACTTCTGgtactgttgctgctgctgctgctgctgctggtgttgctgttgctgctgctgccgctgctgccgctgctgctgctgctgcttcttcGAATGCTCCGGAACACGAATCATCCCATGGCAGTCGGACCCCCTCGCCGGAGGACCATCACCACCACAATCGCCATcgccatcatcatcatcgttatcaTCACGAATCGTTGCAACCTCAACCTTCGCAATCGGCACCGGCGTTGCTTCAACAAAATGGCTCGGATTAG
- Protein Sequence
- MSRNRGAYMCAWKRKTIAPPVETKENEAEVEGQVASANNGAEAVEKMSSTAESPDGMAFQSHFSLRWNNHQAHILQSFEALLHQEEFVDVTLVCADTSYRAHKVVLSACSPFFEKIFAAHPCKHPVIVLKDFPGSEISALIDFMYRGEVQVSREELPGLIKAADNLQIRGLTSTELREASPSDTQMADFNFGEPSTPEEARQDTPEEEDNASEIETIATSKRTIYHPSGDHRDRLPHMTHLNFGVRDLRETCSSPLMPRRKQARPRRRSGELVPQDLSRPHPPRSLSPPFTSLNLSNNHQQHQNQQLNQHHLQLSASASNQQQEQEEMAENLSIKRTLSPIGQEQLHQQYHHINQQLHQVKTESSETASSPRGSPLTGTSLLHPDGSFQDIPSVAAAAVVGIPAMSAALSLTSPHHHSEYLTSMGQLAVRWLPNHPQSQLPPPPTQSHHSRPDSPLGTARTSHTYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQESSRRGSIASMFPLDTVASLSGLFSPGAGIDRGSLLADLHDGLKPEQLHGLFVPAALTSHPPSKKRKLRAEGDPPRRWTDQGGRNVPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGDAVMNSLNNNVKTVQQPPAQLGHPLVGLPPHPADDSGFPHHSLLGSNLSQAYYPDFASATFPVPVNMIHLLPPSEQKVYEHPGSSNNNVSVGGNGSSGTTGNGNTAGTSGTVAAAAAAAGVAVAAAAAAAAAAAAASSNAPEHESSHGSRTPSPEDHHHHNRHRHHHHRYHHESLQPQPSQSAPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233565;
- 90% Identity
- iTF_01234265;
- 80% Identity
- iTF_01232485;