Pneb035437.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- -
- Assembly
- GCA_951329385.1
- Location
- OX589602.1:11004488-11006285[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-11 9.3e-09 36.7 0.0 1 38 15 53 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAAAGAACTACTTCTAGACAAGAATGGGATCCGGATAACATGAAAAAAGCCGTTCAAGCGGTATTTGATGGCACCATGGGTTACTTGAAAGCTGCCAAAACTTTTGAGGTATCAAAATCAACATTACAAGATCGAGTAAACCGATTTAGACAGAACAATGACCCTGAACCTGAACCTTTTCTATCCCAAGAACAAAGTCTAGTTGAGCAAGTCTTGATCATGGAAAAACGATTATTTGGTCTCACGTATAAAGATCATCGACGCTTAGCGTATCAGCTCGCAGAAGCAAACAATATTGACCATTGTTTCAATAACGTTTATAAACTAGCGGGAGAAGATTGGCTGGCTGGGTTCATGAAGCGACACCCACAATTATCACTGCGTGCTGCCGAGCCGACGTCGGTGGCAAGAGCAATGGGATTTAATATGGTCAGTGTCAACAGATTTTTTGATTTGTTAGAGGAAGTTATAGATCAATATAAATTTTTGCCTACGAAAATTTACAATGTGGATGAAACGGGCCTGACAACGGTACCAAAAAGACAAAGCAGAATAGTTGCTTTAAAGGGAAGAAAACAGGTTGGTCTAGCTAGTTCAGCGGAAAGAGGCCAGCTGACTACCGCTGTCCTGTGTGTGTCTGCTTCTGGAAATTATATTCCTCCACTGCTAATATTTCCACGAGTTCGGATGAAGGCTGAACTTCTAGATGGTGCTCCACCAGGGACAGTTTCGGTTTGTCATCCAAGTGGGTGGATAcaaagtgatatttttgttgAGTGGTTGAATCACTTCATATCGTCAGTAAAGCCCAAAAAAGATGATCCTGTCCTTCTTTTACTCGATGGACACTCGACCCATACAAAAAATCTCCCACTGATCGAAAAAGCTAGGGACAATGGAGTTGTAATTTTAAGTTTCCCCCCTCATTGCACCCACAGACTTCAACCGCTTGACGTGAGTATCATGGGTCCATTAAGCACTTATTACACCCAAGAAGTGAACGCGTGGCTACGGAATAATCCGGGTAGAGTAGTGACACAGTTCCAGCTGGCAAGACTTTTTGGAGCAGCGTACTGTAAAGCGGCAACTGTACAGAACGCCGTATCTGGCTTTACTAAAACAGGCATATTCCCAACGAACAGGACAGTATTCGGAGAAGCAGATTTTGCCGCGGCTGAGACAACGGAAATACCTTCTACAACTCCATCAATTTCCACCGATGCAGATGTCAACCCGACACCATCAACTTCTTCAGCGCCATTCGTTCACTCAACACCATTAATTTCTGCTCTACCTATTGAGCCGACGCCATTAACTAACACAGCATCGCCAGTTCTTACAACGTTGAACCAGAACCGTGTAACGGTGTCTCCAGCGGATATAATGCCAGTTCCTACGATAAGCGTGGACCGTAAAAGAGCAACCGATAACCGAAGAGGAAAAACTGCAGTTATCACTTCCTCCCCCTATAAAAACGAGTTAGTATCCATCTCACAAAATAAAACTCCTAAGTTTAATTTGACTCAACCTTCTAAggccaaaaaattaaaacaaaaaataataaatgacaaCATTTGTTTGTACTGCCTGGAAGAATATGGTTCAAGCCGCGTGGACGAAGGTTGGGTGCAATGTAGGGAGTGCAAAGGTTGGGCTCATGAAGGTTGCACAGGTTATGACTCCGACGATTTAGATGATTTTGTATGTATGGGATGCGTTGCTTCCAGATAA
- Protein Sequence
- MPRNYKRTTSRQEWDPDNMKKAVQAVFDGTMGYLKAAKTFEVSKSTLQDRVNRFRQNNDPEPEPFLSQEQSLVEQVLIMEKRLFGLTYKDHRRLAYQLAEANNIDHCFNNVYKLAGEDWLAGFMKRHPQLSLRAAEPTSVARAMGFNMVSVNRFFDLLEEVIDQYKFLPTKIYNVDETGLTTVPKRQSRIVALKGRKQVGLASSAERGQLTTAVLCVSASGNYIPPLLIFPRVRMKAELLDGAPPGTVSVCHPSGWIQSDIFVEWLNHFISSVKPKKDDPVLLLLDGHSTHTKNLPLIEKARDNGVVILSFPPHCTHRLQPLDVSIMGPLSTYYTQEVNAWLRNNPGRVVTQFQLARLFGAAYCKAATVQNAVSGFTKTGIFPTNRTVFGEADFAAAETTEIPSTTPSISTDADVNPTPSTSSAPFVHSTPLISALPIEPTPLTNTASPVLTTLNQNRVTVSPADIMPVPTISVDRKRATDNRRGKTAVITSSPYKNELVSISQNKTPKFNLTQPSKAKKLKQKIINDNICLYCLEEYGSSRVDEGWVQCRECKGWAHEGCTGYDSDDLDDFVCMGCVASR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123285;
- 90% Identity
- iTF_01062732; iTF_01085068; iTF_00000244; iTF_00123284; iTF_00726228; iTF_00726229; iTF_01085079; iTF_01085080; iTF_00445049; iTF_00973689; iTF_00445050; iTF_00667290; iTF_00445051; iTF_00667291; iTF_01230459; iTF_00667292; iTF_01230460; iTF_01230461; iTF_00667294; iTF_01230462; iTF_00667295; iTF_01230463; iTF_00123285; iTF_01118198; iTF_00111553; iTF_00007010; iTF_00111554; iTF_00007011; iTF_00111555; iTF_00007012; iTF_00111556; iTF_00007013; iTF_00007014; iTF_00007015; iTF_01119243; iTF_01119244; iTF_01119245; iTF_01119249; iTF_01118197; iTF_00111550; iTF_00111551; iTF_00111552;
- 80% Identity
- -