Pneb025070.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- e2f4
- Assembly
- GCA_951329385.1
- Location
- OX589597.1:9040712-9046222[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-29 8.3e-25 88.2 0.3 2 65 10 74 9 74 0.98
Sequence Information
- Coding Sequence
- ATGACGGACTTAAAATCAAAGAGACATGAAAAATCTTTAGGTTTACTTACAACGAAATTTGTGTCACTGCTGCAAAAAGCAAAGGATGGTGTCTTGGATTTGAAAGTCGCGACGAATTTGCTAGCAGTCAGACAAAAGAGAAGAATATACGATATAACTAATGTCTTGGAAGGTATCGGTTTGATTGAGAAACGAAGTAAGAATAGTATACAATGGAAAGGTGCAGGTCCAGATTGCAAAACAAGTGATATTGGTCAAAAAGTGATAGTTTTGAGAAAACAAATAGGGCGCCTAGACGAACACGAAAAAATACTTGATAACCAATTACATTGGATTGAACAAAGCATAAAGAATGTGCTAGACGACACAGACAATAATGACTTATGTTTTGTTTCTGACAAGGATATTAAGGAGTGTTTTGATGAGAGTCAAGTGTTAGTATTAGAGGCACCTTTGGGTGCCGATTTGTCAGTTGGGACTACACCTAGTAGTAAGGACCAAGATCagcattattttttacatttaaaatcaACAGAATCCATTGGAGTTATACTTTTaagtgatagtgatagtgaaaaGGAGATGGATGAAGATAATAATATGGATGACAATGAGGTACAGAAGTATACTGAAAGCAGAAGTGGGGATAGTATAAACGCCAGTAaTTACCTGCTGAGACTGAGTCCACCAGTAACTAAATACGACTTCTCATTTTCTCTCCATGGATCAGAAGGATTGTGTGACTTATATGACATCCCATGTTAG
- Protein Sequence
- MTDLKSKRHEKSLGLLTTKFVSLLQKAKDGVLDLKVATNLLAVRQKRRIYDITNVLEGIGLIEKRSKNSIQWKGAGPDCKTSDIGQKVIVLRKQIGRLDEHEKILDNQLHWIEQSIKNVLDDTDNNDLCFVSDKDIKECFDESQVLVLEAPLGADLSVGTTPSSKDQDQHYFLHLKSTESIGVILLSDSDSEKEMDEDNNMDDNEVQKYTESRSGDSINASNYLLRLSPPVTKYDFSFSLHGSEGLCDLYDIPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037568;
- 90% Identity
- iTF_00951585; iTF_01084929; iTF_00039586; iTF_00041571; iTF_00040586; iTF_00043274; iTF_01063541; iTF_00299941; iTF_00850385; iTF_00667148; iTF_00121187; iTF_00123142; iTF_01439686; iTF_00172522; iTF_00745419; iTF_00374965; iTF_00924382; iTF_00274240; iTF_00301892; iTF_01093830; iTF_01094691; iTF_01061673; iTF_01064426; iTF_01531756; iTF_01533728; iTF_00237258; iTF_00363819; iTF_00757932; iTF_00830957; iTF_00905904; iTF_00711606; iTF_00120281; iTF_01285337; iTF_00124028; iTF_00122147; iTF_00952497; iTF_00147092; iTF_00037568; iTF_01532820; iTF_00851510; iTF_00273403; iTF_00176899; iTF_00726077; iTF_00808895; iTF_00809850; iTF_01119071; iTF_01028053; iTF_00888007;
- 80% Identity
- -