Lnic007446.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- e2f4
- Assembly
- GCA_963855955.1
- Location
- OY979666.1:17968117-17972198[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-29 5.4e-25 88.1 0.3 2 65 13 77 12 77 0.98 2 2 2.1 2.2e+04 -3.5 0.0 56 64 107 115 105 116 0.74
Sequence Information
- Coding Sequence
- ATGTCGGCAATGACGGACTTGAAATCTAAGAGACATGAAAAGTCTTTGGGTTTACTTACAACGAAATTTGTGTCATTGCTGCAAAAAGCTAAGGATGGTGTTTTGGATTTGAAAGTCGCGACGAATTTATTAGCCGTAAGACAAAAAAGAAGAATATATGATATAACTAATGTGTTGGAAGGCATCGGTTTGATTGAGAAACGGAGTAAGAACAGTATACAATGGAAAGGTGCAGGACCAGATTGCAAAACAAGTGATATTGGTCGAAAAGTGATAGTTTTGAGAAAACAGCTAGGGCGCCTAGACGAACACGAAAAATTACTTGATAACCAGATACATTGGATTGAGCAAAGCATAAAAAATGTGCTAGACGACACAGACAATAATGACTTATGTTTTGTTTCCGATAAGGATATCAAAGAGTGTTTTGATGATAACCAAGTTTTAGTATTAGAAGCACCTTTAGGTGCTAATTTATCAGTTGGGGCTATACCTAGTAGTAAGGACCAGGAccaacattattttttacatttaaaatcaaCAGAATCAATTGGAGTTATACTTTTAAGTGATAGTGATAGTGAAAAGGAAACAGATGAAGATGCAAGTATGGATGACAATGAAGTACAGAAGTACACTGAAAGCAGAAGTGGGGATAGTATACATGAAAACAATTACCTGTTGAGACTCAGCCCACCAGTAACTAAACACGACTTCTCTTTTTCTCTCCATGGATCAGAAGGGTTGTGTGACTTATATGACATCCCATGTTAG
- Protein Sequence
- MSAMTDLKSKRHEKSLGLLTTKFVSLLQKAKDGVLDLKVATNLLAVRQKRRIYDITNVLEGIGLIEKRSKNSIQWKGAGPDCKTSDIGRKVIVLRKQLGRLDEHEKLLDNQIHWIEQSIKNVLDDTDNNDLCFVSDKDIKECFDDNQVLVLEAPLGANLSVGAIPSSKDQDQHYFLHLKSTESIGVILLSDSDSEKETDEDASMDDNEVQKYTESRSGDSIHENNYLLRLSPPVTKHDFSFSLHGSEGLCDLYDIPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037568;
- 90% Identity
- iTF_01230302;
- 80% Identity
- -