Pcha008788.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Pogonus chalceus
Gene Symbol
RHOBTB1_1
Assembly
GCA_002278615.1
Location
CM008230.1:8860677-8871792[-]

Transcription Factor Domain

TF Family
BTB
Domain
zf-C2H2|ZBTB
PFAM
PF00651
TF Group
Zinc-Coordinating Group
Description
The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 8.2e-08 2.5e-05 24.7 0.1 4 44 257 296 254 315 0.83
2 3 8.2e-07 0.00025 21.4 0.1 46 105 388 446 372 451 0.84
3 3 2.1e-17 6.2e-15 55.6 0.1 5 103 474 571 471 578 0.92

Sequence Information

Coding Sequence
ATGGACAATGAACAACCCCACCAGGAACTCGTCAAGTGTGTGGTGGTGGGTGACACAGCCGTTGGCAAAACAAGACTTATCTGTGCCCGAGCATGCAATAAACAGGTGTCCCTATCACAATTACTTACAACCCATGTCCCCACTGTATGGGCCATTGATcaatatagaatttataaagatgtTTTGGAGCGATCTTGGGAAGTCGTGGACAGCGTCAACGTGTCCCTTAGATTATGGGACACATTTGGAGATCATGAGAAAGATAGACGATTTGCGTACGGCCGATCAGATGTCGTACTTTTGTGCTTCTCTATCAACAACCCGGTCTCGTTACGAAATTGCAAGCTGATGTGGTATCCAGAAATACGTAAATTTTGTCCACAAACGCCAGTTCTCTTGGTTGGATGCAAGAATGATTTACGATATATGTATAGGGATGAAACTTATCTTAGTTATTTCAGAGATAAGAGTCCCTTTGTaagGGCAACCCGCAAAAGCGATTTAGTAATGCCCGATGAAGCTCGAAGTGTTGCCCGTGAACTGGGTGTTTATTATTACGAAACATCTGTGTTCACCTATTATGGGGTAAACGAAGTTTTTGAAAATGCAATTAGGGCAGCTTTAATGGCTCGAAGACAACAGCGCTTTTGGATGACTAATTTAAAGAAAGTGCAACGTCCTCTTTTACAGgcACCGTTTAAGCCTCCAAAACCTGTATCTCCTGAAGTTGTAATCTCATCAAGTACCTATCAAGATCATATGACTGCACTATGGTTGAATCAGATTCACACTGATTTAGTTTTAGTAGCCGGTTCAATCGGTTTCTCGGTTCATCGATTTATTTTAGCCGCTAGTTCCAACGCATTCCACAGATTGCTTACTATGGAATTCACATCGGAGATGGGAGCTCGCAGTAGTAGTGAATCTAGCATGgtaAGCACTTTTGGAGAAGCTACAGTAGGAGAATTCAATGATGATACAGAGTATTTGATCCGGGCTGACCAAACGAAATCATCCAAaatgtgGGAACAACTTAAAAGAAGAGCAAGCTGTCAAGTTTTACCGACAATGGATAGAGAAAAACCAATTAACGCAAGTAGGGAATTAAATCATCCAGCGTTCCAGTCTATTAGAATCACCCAAGTAGAGGGTTTGCAGACATCTAATACACAAACAGTTGTGACACTTACGAAACTGGTGACTCCTCAAGCTATGCAGCAGTGCCTCCAGTTTGTGTATACAGGAACTATAGATAAGAGATTTTTCGAATTACaggaaatGCGTCAAGCTGCTGAATTTTTAGAATTGCCTCATCTTTTGGCTTTGTTGTCAAATATTCAAGCGAATCAACAATTTATGAATAGTGATGCAATGGAAAATTACTCAAAAGCGTTTCGAAGAAGACTGGAAGAATTATGTTTAGAACAAGGACTTTTTGCTGATGTCATTTTTGAATTAGATGATGGTGCTTATCCTGCCCATAAACCAATGTTGATGGCTCGATGTGATATGATGAAAGCAATGTTTAGTGGGGATTTTAGAGAAAGTCAAGCTAAAGTAATTGTATTTCCGGGGGTAAGAGAGTATACATTCCACAAACTGCTGTGTTATTTATACACTGATGAAATTCCGGCCATATCAGCTTCAAAGTGCTTAAATCTACTTGAACTAGCAAATCGGTTATGTTTACCGCGATTAGTAAATCTTGTAGAATGTCGTGTTATTGAAGATTTAACGAGATTATCACAAAATGAAGGCAATGAAGCTGTAGAACATTGTCTTAGACTTTTAGAACCAGTGAagttgcaTAATGCTCATCAACTAGCTGATTGGTGCATGAATCATTTATGCGTTAACTATAACAAATTATGTAAGATGTCTCCAAAAAGTATGAGACTTCTTCATCCAGAAAATCAAGAATATTTGAGTGAAAATCGTTGGCCTCCAGTTtggtATCTCAAAGATTAcgattattatcaaaaatgtttGGCCGAACGGGACAAGGAAAATAAACCTTCGTTAAAACGAAGTCAAAATACGTCTGGGTGTTTATGTTTTTCGGGAAAATCAAGACGCTCAGAATCAACTGAATCAAATCCTGATGTATCCACTGGATTGTATAATGATGGTGCGACAACCAGTAGTCAAGATGTGGCACTTTGA
Protein Sequence
MDNEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLSQLLTTHVPTVWAIDQYRIYKDVLERSWEVVDSVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSINNPVSLRNCKLMWYPEIRKFCPQTPVLLVGCKNDLRYMYRDETYLSYFRDKSPFVRATRKSDLVMPDEARSVARELGVYYYETSVFTYYGVNEVFENAIRAALMARRQQRFWMTNLKKVQRPLLQAPFKPPKPVSPEVVISSSTYQDHMTALWLNQIHTDLVLVAGSIGFSVHRFILAASSNAFHRLLTMEFTSEMGARSSSESSMVSTFGEATVGEFNDDTEYLIRADQTKSSKMWEQLKRRASCQVLPTMDREKPINASRELNHPAFQSIRITQVEGLQTSNTQTVVTLTKLVTPQAMQQCLQFVYTGTIDKRFFELQEMRQAAEFLELPHLLALLSNIQANQQFMNSDAMENYSKAFRRRLEELCLEQGLFADVIFELDDGAYPAHKPMLMARCDMMKAMFSGDFRESQAKVIVFPGVREYTFHKLLCYLYTDEIPAISASKCLNLLELANRLCLPRLVNLVECRVIEDLTRLSQNEGNEAVEHCLRLLEPVKLHNAHQLADWCMNHLCVNYNKLCKMSPKSMRLLHPENQEYLSENRWPPVWYLKDYDYYQKCLAERDKENKPSLKRSQNTSGCLCFSGKSRRSESTESNPDVSTGLYNDGATTSSQDVAL