Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: stc
Assembly: GCA_017141365.1
Location: JAEVLP010000049.1:184907-189145[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5 2.6e+04 -3.7 1.1 15 19 484 488 483 488 0.82

2 14 0.36 6.2e+03 -1.7 0.3 4 10 517 523 516 525 0.91

3 14 5.1e-06 0.087 13.8 12.9 3 18 533 548 532 549 0.92

4 14 4.5e-09 7.8e-05 23.5 16.8 1 18 585 602 585 603 0.98

5 14 3.2e-05 0.55 11.2 10.9 1 19 641 659 641 659 0.92

6 14 0.46 7.9e+03 -2.1 1.4 5 10 688 693 688 693 0.96

7 14 7.2e-05 1.2 10.1 13.2 4 18 706 720 699 721 0.86

8 14 2 3.4e+04 -4.6 1.6 5 10 750 755 750 755 0.90

9 14 0.0083 1.4e+02 3.5 11.3 1 11 761 771 761 783 0.88

10 14 6.5e-09 0.00011 23.0 12.5 1 18 788 805 788 806 0.97

11 14 0.35 6e+03 -1.7 0.6 5 10 834 839 832 839 0.95

12 14 2 3.4e+04 -5.7 8.5 10 19 853 863 842 863 0.78

13 14 6.1e-07 0.01 16.7 12.3 1 16 899 914 899 925 0.85

14 14 7.6e-06 0.13 13.2 13.6 1 19 931 950 931 950 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5	2.6e+04	-3.7	1.1	15	19	484	488	483	488	0.82
2	14	0.36	6.2e+03	-1.7	0.3	4	10	517	523	516	525	0.91
3	14	5.1e-06	0.087	13.8	12.9	3	18	533	548	532	549	0.92
4	14	4.5e-09	7.8e-05	23.5	16.8	1	18	585	602	585	603	0.98
5	14	3.2e-05	0.55	11.2	10.9	1	19	641	659	641	659	0.92
6	14	0.46	7.9e+03	-2.1	1.4	5	10	688	693	688	693	0.96
7	14	7.2e-05	1.2	10.1	13.2	4	18	706	720	699	721	0.86
8	14	2	3.4e+04	-4.6	1.6	5	10	750	755	750	755	0.90
9	14	0.0083	1.4e+02	3.5	11.3	1	11	761	771	761	783	0.88
10	14	6.5e-09	0.00011	23.0	12.5	1	18	788	805	788	806	0.97
11	14	0.35	6e+03	-1.7	0.6	5	10	834	839	832	839	0.95
12	14	2	3.4e+04	-5.7	8.5	10	19	853	863	842	863	0.78
13	14	6.1e-07	0.01	16.7	12.3	1	16	899	914	899	925	0.85
14	14	7.6e-06	0.13	13.2	13.6	1	19	931	950	931	950	0.97

Sequence Information

Coding Sequence: ATGGCCACCTGGGATGGCTCGTATCAGGAGGACCCGAATTACTTCGTGTACGCCGATGGGAGTGCGGCCAACGCTATCACGGGAGACTGGCCGTATATCTCTGGGAACGTAAACTCCAGAAACTATTATCCGGCAGCCGAGGGCGGTCAGCGCGTATATGAGCAGAGCGGCGGCTCAGCCACAGCTTTCTATCAGCACCCGTCGAACATGGTGCCTTTGGGAAACAATATCTACGAGGAACGTGTACTGCCAGGCTCCTCATCCGCGGAAAATACGCGGGCCTCAAACACCGTCCATGCAACATCGCGCAACAAGCCGTCCTTCTCCCGTGGCGGTTACAGACTGAGATCTAGAGGTACTCGCATGCCCGGCAAACACACGCCGCCAGGCATGTCATCATCGTCGTCGGCGTCGACATCGGCGTCGGCGGGCGACGTTTTTATTCAGTCTAGCGTAGTAGAGAACTCCAATCTGCATCCCATGGCTAACGAATTCGTGCCGAATAATCAGGTAAGATTCAAGAAGAATTCCAGATTTGGCAAAAGATTGGATGAACAGGGCAATGCCGCAGGAAAAGGTTTTAATACCTATGCGCAGGAATTCAAACCAAAATCGACCTCGATGGACAACAGGTACAAAGGCGAGAAGCGTTATGATAATAGAAGGGATATGAGTTACAGGCAGAGAAACTCGCAGCAAGACATGCAATTGAGATCGGGCTACAGGGGTACTCATAGAACATACAACACGAGAAATTATAATAAATTTCAGAACGGCAAATATTACAATAAGAAGCATCAATCAGATGTATCCTTCATGGAACAGAATACTGGAGAAGTTCACTCATTTACGGTTGAAGCTTCTGATTCAGCTACAACTAATAGTCAAGAAAATAAGATTGTTGTTGAGGAGATTCAGGAAAATGACTCGTCTTCGGATACAAGGATCAGTAGAAATAAAGAAGAAACGCTGATGCATGATAATAACGATTCGGGAAATATGCCCTTGAAAATTTCTGAAGCACAACGAAACGGTAGATCTAAGCGATTCGCCAATACATCTAATAATTATAAATATAATCCAGATGATATGCAATCTGAACCTAGTGCTAGATACAAGACAACAGGAAGACAAATACAAAGAAGAAATGAGACAAGTTACAAGGAGAAGAAACTAGAAAATTGGAGAGACAGGGCAGAGAATAATGAAATGACACGTGCAGGGCAGGGGAAAAATTTGAAGAAAAAATGTGACATTGATGATGACGCGAGTCAAAGGGAGAGATTAACTGAACAATTGAACAAGGGAATATTGGAATGCTTGGTCTGTTATGAACACATCAAGCAAAATGACTACGTTTGGTCTTGTAGTAATTGTTATCATGTATTGCATTTGAAATGCATCAAAAAATGGGCAAAATCATCCCAAGGTGAGAATAACAGTTGGAAATGCCCGGCTTGTCGAGACGTTAGTTTTCTCGTGCCTGAAGATTACGTCTGTTTTTGCGGAAAGATGAAGATGCCAGAGTGGAACCGCAGAGACGTGGCACACTCGTGCGGCGATATCTGCGGCCGACACTTATCCAAGAATAATTGCACGCACAAATGCACTCTGCTTTGTCATCCTGGCTCTTGTCCGCAATGTGTGGCGATGGTGACTAAATACTGCGGATGCGGGAGAACGTCGCAAATGCTACTGTGTAGCGCTCATCAATTGTTGATGTGCGATTCGATATGTGGAAAAGATCTATCGTGCGGCAAGCACACCTGCCAAAGAAAATGCCATCAAGGAGAATGCGGGCCCTGCGACAAAATTGTGCGACAAACGTGTTTTTGTAGTAAGAAAATTCAGGAAGTACCTTGTCGAGCCAATGTCGCAGATACGTACTGCTGTGATAATATTTGTAACAAACCATTGGATTGTGAGAAACATTATTGTCAGAAAATCTGTCATTCGGAACCTTGTGAATCCTGTTCTTTGACGCCCGAGAGAATTACAATGTGTTGCTGCGGTCAAACACCGTTAACGGAGAAGAGAGAGAGCTGCATGGATCCTATACCGACTTGCGAAAAAATCTGCTCAAAACGCTTGAAATGCGGCCAGCCTAGTAATCCACATATTTGTAAGGCACCGTGTCACACGGGAAAATGCCCAGAATGTGACTTGACTACTGACGTTAAATGCCGATGCGGTAATATGGATCGCGAGATCGCTTGCAAGGATCTAACGAGTAAGGCCGATGACGCACGCTGCGAAAAACGCTGCAAGAAAAAAAGATCCTGTGGCAAACACAACTGTAATCAGCTATGCTGCATCGATATCGAGCATATCTGTCCATTGCCATGTTCAAAGACCTTAAGCTGTGGTCGGCACAAGTGTCAGGAGAGATGTCACATGGGAAGATGTTCACCTTGCTTGGAAAGCAGCTTTGAAGAGTTGTACTGTGAATGTGGTGCTGAGGTAATCTATCCGCCAGTACCGTGTGGTACGAGGAGGCCTACTTGCAATCGGCCGTGTTCGCGCGAACATTCTTGTGACCATGAGGTGCTGCACAATTGTCACAGCGAGCCCACGTGTCCACCTTGCAGCGTTCTAACTCAGAGATGGTGTCACGGCAAACACGAGCTTAGAAAGGCAGTACCATGCCATGTGAAAGAAATTTCATGCGGTCTGCCTTGTAACAAGCCGTTGGTATGCGGACGGCATAAATGCATCACGATGTGCCATTCTGGACCCTGTGAGAAATCCGGACAGCAATGTACACAACCATGCACTACAACGAGAGAGTTGTGCGGGCATATTTGCGCCGCTCCATGCCACGAAGGAAAATGTCCAGATACACCTTGCAAAGAGATGGTTAAGGTTACATGTCAGTGTGGACATAGAACTATGAGTCGTGTCTGTGCCGATAACGCGCGAGAATACCAAAGGATAGCAAGCAACATTTTAGCTAGTAAGATGGCTGATATGCAGCTCGGTCATTCTGTCGATTTGGAAGAAGTGTTTGGACAAGGCGCGAAGAAGCAAAATCAGTTGAAGACTCTGGAGTGCAACGATGAGTGCAAGACGATAGAAAGAAATAGAAGACTTGCATTAGGATTACAAATCGTCAATCCGGACTTAAGCGGCAAACTGATGCCCAGATACAGTGATTACATGAAACAGTGGGCTAAGAAAGACCCGCATTTCTGCCAAATGATTCATGACAAGTTGACAGAGTTGGTACAATTGGCGAAGACGTCCAAGCAAAAATCTCGAAGTTACTCATTCGATGTTATGAACAGAGAAAAACGTCATTTCGTACATGAGTCATGCCAGCATTTCGGCTGCGAAAGTCAGGCGTACGATGAAGAACCGAAGAGAAATGTTGTTGCTACTGCTGTGAAAGATAAGTGTTGGTTACCAAGCTATAGTTTACTGGAAGTGATACAGAGAGAAAAAGGACAAAGGAAAGTTCCAGGCCCGGTACTCAATGCTTCGAAAGGAAATAACTCTACAAAGACTGTTCTTTCATTACCTATAAAACAAAATCAGCAATCGCTGCCATCATCTTCAACTAAAACTGCTGACAAAGAGATAGATTATTTTGACTATCGAGGATAA
Protein Sequence: MATWDGSYQEDPNYFVYADGSAANAITGDWPYISGNVNSRNYYPAAEGGQRVYEQSGGSATAFYQHPSNMVPLGNNIYEERVLPGSSSAENTRASNTVHATSRNKPSFSRGGYRLRSRGTRMPGKHTPPGMSSSSSASTSASAGDVFIQSSVVENSNLHPMANEFVPNNQVRFKKNSRFGKRLDEQGNAAGKGFNTYAQEFKPKSTSMDNRYKGEKRYDNRRDMSYRQRNSQQDMQLRSGYRGTHRTYNTRNYNKFQNGKYYNKKHQSDVSFMEQNTGEVHSFTVEASDSATTNSQENKIVVEEIQENDSSSDTRISRNKEETLMHDNNDSGNMPLKISEAQRNGRSKRFANTSNNYKYNPDDMQSEPSARYKTTGRQIQRRNETSYKEKKLENWRDRAENNEMTRAGQGKNLKKKCDIDDDASQRERLTEQLNKGILECLVCYEHIKQNDYVWSCSNCYHVLHLKCIKKWAKSSQGENNSWKCPACRDVSFLVPEDYVCFCGKMKMPEWNRRDVAHSCGDICGRHLSKNNCTHKCTLLCHPGSCPQCVAMVTKYCGCGRTSQMLLCSAHQLLMCDSICGKDLSCGKHTCQRKCHQGECGPCDKIVRQTCFCSKKIQEVPCRANVADTYCCDNICNKPLDCEKHYCQKICHSEPCESCSLTPERITMCCCGQTPLTEKRESCMDPIPTCEKICSKRLKCGQPSNPHICKAPCHTGKCPECDLTTDVKCRCGNMDREIACKDLTSKADDARCEKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCQERCHMGRCSPCLESSFEELYCECGAEVIYPPVPCGTRRPTCNRPCSREHSCDHEVLHNCHSEPTCPPCSVLTQRWCHGKHELRKAVPCHVKEISCGLPCNKPLVCGRHKCITMCHSGPCEKSGQQCTQPCTTTRELCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCADNAREYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKTIERNRRLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPHFCQMIHDKLTELVQLAKTSKQKSRSYSFDVMNREKRHFVHESCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEVIQREKGQRKVPGPVLNASKGNNSTKTVLSLPIKQNQQSLPSSSTKTADKEIDYFDYRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00385965;
90% Identity: iTF_01228701;
80% Identity: -