Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: stc
Assembly: GCA_000187915.1
Location: NW:195569-205333[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5 8.1e+03 -3.7 1.1 15 19 481 485 480 485 0.82

2 14 0.36 1.9e+03 -1.7 0.3 4 10 514 520 513 522 0.91

3 14 5e-06 0.027 13.8 12.9 3 18 530 545 529 546 0.92

4 14 4.5e-09 2.4e-05 23.5 16.8 1 18 582 599 582 600 0.98

5 14 3.2e-05 0.17 11.2 10.9 1 19 638 656 638 656 0.92

6 14 0.45 2.4e+03 -2.1 1.4 5 10 685 690 685 690 0.96

7 14 7.1e-05 0.38 10.1 13.2 4 18 703 717 696 718 0.86

8 14 2 1.1e+04 -4.6 1.6 5 10 747 752 747 752 0.90

9 14 0.0083 44 3.5 11.3 1 11 758 768 758 780 0.88

10 14 6.9e-08 0.00037 19.7 10.4 1 18 785 802 785 803 0.96

11 14 0.35 1.9e+03 -1.7 0.6 5 10 831 836 829 836 0.95

12 14 2 1.1e+04 -5.6 8.5 10 19 850 860 839 860 0.78

13 14 6e-07 0.0032 16.7 12.3 1 16 896 911 896 922 0.85

14 14 7.5e-06 0.04 13.2 13.6 1 19 928 947 928 947 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5	8.1e+03	-3.7	1.1	15	19	481	485	480	485	0.82
2	14	0.36	1.9e+03	-1.7	0.3	4	10	514	520	513	522	0.91
3	14	5e-06	0.027	13.8	12.9	3	18	530	545	529	546	0.92
4	14	4.5e-09	2.4e-05	23.5	16.8	1	18	582	599	582	600	0.98
5	14	3.2e-05	0.17	11.2	10.9	1	19	638	656	638	656	0.92
6	14	0.45	2.4e+03	-2.1	1.4	5	10	685	690	685	690	0.96
7	14	7.1e-05	0.38	10.1	13.2	4	18	703	717	696	718	0.86
8	14	2	1.1e+04	-4.6	1.6	5	10	747	752	747	752	0.90
9	14	0.0083	44	3.5	11.3	1	11	758	768	758	780	0.88
10	14	6.9e-08	0.00037	19.7	10.4	1	18	785	802	785	803	0.96
11	14	0.35	1.9e+03	-1.7	0.6	5	10	831	836	829	836	0.95
12	14	2	1.1e+04	-5.6	8.5	10	19	850	860	839	860	0.78
13	14	6e-07	0.0032	16.7	12.3	1	16	896	911	896	922	0.85
14	14	7.5e-06	0.04	13.2	13.6	1	19	928	947	928	947	0.97

Sequence Information

Coding Sequence: ATGGCCACCTGGGATGGCTCGTATCAGGAGGACCCGAATTACTTCGTGTACGCCGATGGGAGTGCGGCCAACGCTATCACGGGAGACTGGCCGTATATCTCTGGGAACTCCAGAAACTATTATCCGGCAGCCGAGGGCGGTCAGCGCGAGCAGAGCGGCGGCTCAGCCACAGCTTTCTATCAGCACCCGTCGAACATGGTGCCTTTGGGAAACAATATCTACGAGGAACGTGTACTGCCAGGCTCCTCATCCGTGGAAAATACGCGGGCCTCAAACACCGTCCATGCAACATCGCGCAACAAGCCGCCCTTCTCCCGTGGCGGTTACAGACTGAGATCTAGAGGTACTCGCATGCCCGGCAAACACACGCCGCCAGGCgtgtcatcatcgtcgtcggcgTCGACATCGGCGTCGGCGGGCGACGTTTTTATTCAGTCTAGCGTAGTAGAGAACTCCAATCTGCATCCCATGGCTAACGAATTCGTGCCGAATAATCAGGTAAGATTCAAGAAGAATTCCAGATTTGGCAAAAGATTGGATGAACAGGGCAACGCCGCAGGAAAAGGTTTTAATACCTATGCGCAGGAATTCAAACCAAAATCGACCTCGATGGACAACAGGTACAAAGGCGAGAAGCGTTACGATAATAGAAGGGATATGAGTTACAGGCAGAGAAACTCGCAGCAAGACATGCAATTGAGATCGGGCTACAGGGGTACTCATAGAACGTACAACacgagaaattataataaatttcagaacggcaaatattacaataagaaGCATCAATCAGATGTATCCTTCATGGAACAGAATATCACTGGAGAAGTTCACTCATTTACAGTTGAAGCTTCTGATTCAGCTACAACTAATAGTCAAGAAAATAAGATTGTTGTTGAGGAGATTCAGGAAAATGACTCGTCTTCGGATACAAGGATCAgtagaaataaagaagaaacgcTGACGCATGATAATAACGATTCGGGAAATATGCCCTTGAAAATTTCTGAAGCACAACGAAACGGTAGATCTAAGCGATTCGCCAAtacatctaataattataaatataatccagATGATATGCAATCTGAACCTAGTGCTAGATACAAGACAACAGGAAGACAAATACAAAGAAGAAATGAGACAAGTTACAAGGAGAAGAAACTAGAAAATTGGAGAGACAGGACagagaataatgaaatgaCACGTGCAGGGCAGgggaaaaatttgaagaaaaaatttgacattgATGATGACGCGAGTCAAAGGGAGAGATTAACTGAACAATTGAACAAGGGAACATTGGAATGCTTGGTCTGTTATGAACACATCAAGCAAAATGACTACGTTTGGTCTTGTAGTAATTGTTATCATGTATTGCATTTGAAATGCATCAAAAAATGGGCAAAATCATCCCAAGGTGAGAATAACAGTTGGAAATGCCCGGCTTGTCGAGACGTTAGTTTTCTCGTGCCTGAAGATTACGTCTGCTTTTGTGGAAAGATGAAGATGCCAGAGTGGAACCGCAGAGACGTGGCACACTCGTGCGGCGATATCTGCGGCCGACACTTGTCCAAGAATAATTGCACGCACAAATGCACTCTGCTTTGTCATCCTGGCTCTTGTCCGCAATGTGTGGCGATGGTGACTAAATACTGCGGATGCGGGAGAACGTCGCAAATGCTACTGTGTAGCGCTCATCAATTGTTGATGTGCGATTCGATATGTGGAAAAGATCTATCGTGTGGCAAGCACACCTGCCAAAGAAAATGCCATCAAGGAGAATGCGGGCCCTGCGACAAAATTGTGCGACAAACGTGTTTTTGTAGTAAGAAAATTCAGGAAGTACCTTGTCGAGCCAATGTCGCAGATACGTACTGCtgtgataatatttgtaacaaacCATTGGATTGTGAGAAACATTATTGTCAGAAAATCTGTCATTCGGAACCTTGTGAATCCTGTTCTTTGACGCCCGAAAGAATTACAATGTGTTGCTGCGGTCAAACACCGTTAacggagaagagagagagctgCATGGATCCTATACCGACTTGCGAAAAAATCTGCTCAAAGCGCTTGAAATGCGGCCAGCCTAGTAATCCACATATTTGTAAGGCACCGTGTCACACGGGAAAATGCCCAGAATGTGACTTGACTACTGACGTTAAATGCCGATGCGGTAATATGGATCGCGAGATCGCTTGCAAGGATCTAACGAGTAAGGCCGATGACGCACGCTGCGAAAAACgctgcaagaaaaaaagatcctGTGGCAAACACAACTGTAATCAGCTATGCTGCATCGATATCGAGCATATCTGTCCATTGCCATGTTCAAAGACCTTAAGCTGTGGTCGGCACAAGTGTCAGGAGAGATGTCACATGGgaaGATGTTCACTTTGCTTGGAAAGCAGCTTTGAAGAGTTGTACTGTGAATGTGGTGCTGAGGTAATCTATCCGCCAGTACCATGTGGTACGAGGAGGCCTACTTGCAATCGGCCGTGTTCGCGCGAACATTCTTGTGACCATGAGGTGCTGCACAATTGTCACAGCGAGCCCACGTGTCCACCTTGCAGCGTTCTAACTCAGAGATGGTGTCACGGCAAACACGAGCTTAGAAAGGCGGTACCATGCCATGTGAAAGAAATTTCATGCGGTCTGCCTTGTAACAAGCCGTTGATATGCGGACGGCATAAATGCATCACGATGTGTCATTCTGGACCCTGTGAGAAATCCGGACAGCAATGTACACAACCATGCACTACAACGAGAGAGTTGTGTGGGCATATTTGCGCCGCTCCATGCCACGAAGGAAAATGTCCAGATACACCTTGCAAAGAGATGGTTAAGGTTACATGTCAGTGTGGACATAGAACTATGAGTCGTGTCTGTGCCGATAACGCGCGAGAATACCAAAGGATAGCAAGCAACATTTTAGCTAGTAAGATGGCTGATATGCAGCTCGGTCATTCTGTCGATTTGGAAGAAGTGTTTGGACAAGGCGCGAAGAAGCAAAATCAGTTGAAGACTCTGGAGTGCAACGATGAGTGCAAGAcgatagaaagaaatagaagacTTGCATTAGGACTACAAATCGTCAATCCGGACTTAAGCGGCAAACTGATGCCCAGATACAGTGATTATATGAAACAGTGGGCTAAGAAAGACCCGCATTTCTGTCAAATGGTTCATGACAAGTTGACAGAGTTGGTACAATTGGCGAAGACGTCCAAGCAAAAATCTCGAAGTTACTCATTTGATGTTATGAACAGAGAAAAACGTCATTTCGTACATGAGTCATGCCAGCATTTCGGCTGCGAAAGTCAGGCGTACGATGAAGAACCGAAGAGAAATGTTGTTGCTACTGCCGTGAAAGATAagTGTTGGTTACCAAGCTATAGTTTACTGGAAGTGatacagagagaaaaaggacaAAGGAAAGTTCCAGGTCCGGTACTCAATGCTTCGAAAGGAAATAACTCTACAAAGACTGTTCTTTCATTAcctataaaacaaaatcagCAATCGCTGCCATCATCTTCAACTAAAACTGCTGACAAAGAGATAGATTATTTTGACTATCGAGGATAA
Protein Sequence: MATWDGSYQEDPNYFVYADGSAANAITGDWPYISGNSRNYYPAAEGGQREQSGGSATAFYQHPSNMVPLGNNIYEERVLPGSSSVENTRASNTVHATSRNKPPFSRGGYRLRSRGTRMPGKHTPPGVSSSSSASTSASAGDVFIQSSVVENSNLHPMANEFVPNNQVRFKKNSRFGKRLDEQGNAAGKGFNTYAQEFKPKSTSMDNRYKGEKRYDNRRDMSYRQRNSQQDMQLRSGYRGTHRTYNTRNYNKFQNGKYYNKKHQSDVSFMEQNITGEVHSFTVEASDSATTNSQENKIVVEEIQENDSSSDTRISRNKEETLTHDNNDSGNMPLKISEAQRNGRSKRFANTSNNYKYNPDDMQSEPSARYKTTGRQIQRRNETSYKEKKLENWRDRTENNEMTRAGQGKNLKKKFDIDDDASQRERLTEQLNKGTLECLVCYEHIKQNDYVWSCSNCYHVLHLKCIKKWAKSSQGENNSWKCPACRDVSFLVPEDYVCFCGKMKMPEWNRRDVAHSCGDICGRHLSKNNCTHKCTLLCHPGSCPQCVAMVTKYCGCGRTSQMLLCSAHQLLMCDSICGKDLSCGKHTCQRKCHQGECGPCDKIVRQTCFCSKKIQEVPCRANVADTYCCDNICNKPLDCEKHYCQKICHSEPCESCSLTPERITMCCCGQTPLTEKRESCMDPIPTCEKICSKRLKCGQPSNPHICKAPCHTGKCPECDLTTDVKCRCGNMDREIACKDLTSKADDARCEKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCQERCHMGRCSLCLESSFEELYCECGAEVIYPPVPCGTRRPTCNRPCSREHSCDHEVLHNCHSEPTCPPCSVLTQRWCHGKHELRKAVPCHVKEISCGLPCNKPLICGRHKCITMCHSGPCEKSGQQCTQPCTTTRELCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCADNAREYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKTIERNRRLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDVMNREKRHFVHESCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEVIQREKGQRKVPGPVLNASKGNNSTKTVLSLPIKQNQQSLPSSSTKTADKEIDYFDYRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00385965;
90% Identity: iTF_01229436;
80% Identity: -