Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: -
Assembly: GCA_017141365.1
Location: JAEVLP010004758.1:62984-67601[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.014 2 9.9 2.9 1 23 410 432 410 432 0.98

2 18 0.039 5.8 8.5 0.5 2 23 469 490 468 490 0.96

3 18 3.5e-05 0.0051 18.1 0.4 1 23 557 579 557 579 0.96

4 18 0.00035 0.051 14.9 1.2 1 23 582 604 582 604 0.98

5 18 4.4e-06 0.00065 20.9 1.3 1 23 649 672 649 672 0.98

6 18 0.0055 0.82 11.2 2.3 1 23 678 700 678 700 0.96

7 18 0.00063 0.094 14.1 0.7 1 20 706 725 706 730 0.94

8 18 1.9e-05 0.0028 18.9 1.3 1 23 801 823 801 823 0.97

9 18 0.00021 0.031 15.6 4.8 1 23 880 902 880 902 0.97

10 18 0.00028 0.042 15.2 0.7 1 20 907 926 907 928 0.94

11 18 0.047 7 8.2 0.3 2 23 939 960 939 960 0.97

12 18 2.9e-05 0.0043 18.3 0.6 2 23 999 1020 998 1020 0.97

13 18 2.6e-05 0.0039 18.5 1.6 1 23 1025 1047 1025 1047 0.95

14 18 0.0011 0.17 13.3 1.7 1 20 1053 1072 1053 1075 0.93

15 18 4.6e-06 0.00069 20.8 0.4 1 23 1091 1113 1091 1113 0.95

16 18 5.1e-07 7.6e-05 23.8 0.6 1 23 1119 1141 1119 1141 0.98

17 18 4.1e-05 0.0061 17.9 0.2 1 23 1147 1169 1147 1169 0.97

18 18 0.024 3.6 9.1 6.9 1 23 1175 1197 1175 1197 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.014	2	9.9	2.9	1	23	410	432	410	432	0.98
2	18	0.039	5.8	8.5	0.5	2	23	469	490	468	490	0.96
3	18	3.5e-05	0.0051	18.1	0.4	1	23	557	579	557	579	0.96
4	18	0.00035	0.051	14.9	1.2	1	23	582	604	582	604	0.98
5	18	4.4e-06	0.00065	20.9	1.3	1	23	649	672	649	672	0.98
6	18	0.0055	0.82	11.2	2.3	1	23	678	700	678	700	0.96
7	18	0.00063	0.094	14.1	0.7	1	20	706	725	706	730	0.94
8	18	1.9e-05	0.0028	18.9	1.3	1	23	801	823	801	823	0.97
9	18	0.00021	0.031	15.6	4.8	1	23	880	902	880	902	0.97
10	18	0.00028	0.042	15.2	0.7	1	20	907	926	907	928	0.94
11	18	0.047	7	8.2	0.3	2	23	939	960	939	960	0.97
12	18	2.9e-05	0.0043	18.3	0.6	2	23	999	1020	998	1020	0.97
13	18	2.6e-05	0.0039	18.5	1.6	1	23	1025	1047	1025	1047	0.95
14	18	0.0011	0.17	13.3	1.7	1	20	1053	1072	1053	1075	0.93
15	18	4.6e-06	0.00069	20.8	0.4	1	23	1091	1113	1091	1113	0.95
16	18	5.1e-07	7.6e-05	23.8	0.6	1	23	1119	1141	1119	1141	0.98
17	18	4.1e-05	0.0061	17.9	0.2	1	23	1147	1169	1147	1169	0.97
18	18	0.024	3.6	9.1	6.9	1	23	1175	1197	1175	1197	0.96

Sequence Information

Coding Sequence: ATGGACGCCGTGGAGATAAATACGTCGGATCCGCCGCAGGGCGAGGACGCGATCGCGTCCCCCGTCAAGATATGCCGCGTGTGTCTGCTCGACAATCTGATGATGCGCGATCTCTTCGCGGAGACCGAGGTCGCGTCCCTGTCGGAAAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGCGACGGTCTACCAGCACAAGTGTGCTGTATGTGTGCTGACAAGCTAGAGTCGGCGTACGAATTTAAGTTACAAGTGGAGCAAGCTGATAGTGTTCTTCGAGAGAAACTCGAGGTTGGAGGAATAATAAAGGAGGAATTGTTTCTTAACGAGGTTGAAATACACTTAGATGCCGAGAGGAGTGACAATATGGATGAGATAAATGTTAGTGCTGATTATGGATCCACTGCAGTGTTGCCAGTGGAATCGGAAGCTGACAAGAATTTTCTGAAAAATCAGTTAATGATGTTGGAAGCTGAAAAATTGGCAGAGACGGGAGAGATACAGCAAGGTTCACAAGACAATTCACAGGAAATTACACATGAAGTTAGTCAAAGTATTGAAGAATTGCAGCAAGAACTAACCAGCGAGGATGACAATGATATGGCGGATGTTATCGAGGAATCTAGAGATGAAATATCCAATCACGAAAATATTATTCGAAGTTGTACCGATGCGATTCCAACAGAAGAGCATGATTATATTATGCAGCAACAGTGTATCCTGCCTGCTGAACAACTTTCGTTGCAGGAAGAGATACAACAGAGTGTATCAGTACTTGAACAAGACACAATGGAACATCAAGAAACATCAATCGAGCAGAACCAACAGATTCATCCTGAGCAAAACCAAGAGAATCAGATCGAGGCATCTCAAGAAATTCAGGCTGAGCAAAACCAAGAGATTTTGATTGAACATAAACAAGAAATTCTGATTGAACAAAATCAAGAAGATCAAGCCAAACAAGTTGAGGAAAATGAAGCTGAACAACATCAAAATAACAAGGAATTACTTAAGGAATTATTCAAGGAAGAATTTAAAATCGATAGTAATGAGCCAACAGTGGAGCAAGAATCATCTCAGAATGAAACCAGAAGAAGTAAACGAAGATTGGCACGTCGAATATTCACCGAGCGAGATTCCGACGAGGAGAACTATTTCGAAAATTTGAATCTCAGTTCTCGATTGAAAAAGGCGCAAGCGGACAAGACAGAGAAGGTCTTTTACATGTGTTATTTGTGTGACAAGCAGTTTCTTTCAAAGAGCGTCTTGAAAGAACATATGCATTCCCACGAAGAAGTAAGAAAGACATTGTCGTTGAAGAAAACGCCAGAGAAACCGCAAAAGGTGCCGACCAATGTTTCCATGACGAAAACTCCGCCATCCGGAAAGAAAGCCAACAAGTGCACTTACTGTGGTAAAGAATATCTGTACATAATCTCGTTTGCTAAACACATTAGGCAACACGAGCGGGAGCGAGAGGAATCTAAAGAAGATCCGATGCCGCTCGAGGTATCGTTCCATGAGGATGAAAACAGTCTAGACTTTGACAACGCCAACAGATCGGATGATGAATGCAGAAAACGAAAAATAGGAAGTACATCCGACGACGCCGCGAGCGATAATGATCAAGATAAGAAGAGAAAGCGTAGTTACGTTGAGGAATTTGCGTGTGATAAATGTCCAGAGAAATTCGATACAAAACGCGACTTGCAGAAGCACTTGCTTGCACATATTAGCTTCAAGTGCAGTGTGTGTAATGAGGAGTACGAAACCCTGGAGCAACTGAGAAATCATCGAACGAAACACGTGGTCGAAGGCGTGCTCAGCGAGCAGGATTTGGAGGAGGACATAAAGCAGAACATCGAGAACAACGATGAAAACAACAAGAATGAGAACGAGGAGAATAACGGCGAATCTACTGAAGAATCTACGAAGGAATTCAAATGTCCGACATGTTCGATGATGTTCTCGCGCAAGAAAGCTCTCTCCAGACATATAGAGACGACACACTCTAGCACTCGTTCTTATGAATGCAAGATATGTTGTCAGCAGTTTGTTCGGAAGGATTTGTTACGAAGACATGCTGAACAGCATGCACGAGTAAAAACCTACAAGTGTACCCAATGCAATAAGACTTTCGGCAACGAACTGACTCTAAGAAATCATTTGGTTGCCACGAATCATAAGACGTTCATACATGGACAGGAATACGATCCGAATAAGCGTATAAAGCGCGTGGCGGCGAAAGCGGCGCAGAAGATCATCGATAAGATCAAGACAGAGGATGGACTCGAGGATTACGACGACGATGACGACAATACCGATTATAAGGTAGACGGGCATTATCGCCGTAAACGCGATGCTACACCAAAGAAGTACAATTATAAGAAGGAATTTGAGTGTGCAACTTGTAACAAGAGATATAGTTCGAAACAAGCGCTGACGAAGCACATGGAGCAACATGTGAAGGAGGAGAAAGCGGAAAAGGCAGCGGAGAAAGTGGCGGAAAAGCTGAAGAAGGCCGCTTTGGAGAAGAAGGAGACGCAGAAAACTAGTAACACAGGCGATAACGATGACGATGATGACAATGATTCTGATTTTGAAAGCGGCCTCGACTGGCCGATGGATAGTCATGAATGCAGCACGTGCAAAAAACGATATAGTACGAAGAAGTCATTGTTGCGTCATCAGTTGTTACATGAGGAACCGAACTTTGAATGTGACATCTGCAACGTCAAGTTTTATCGCAAAGACAAGCTGAAGGCGCACTACGACAAGTGTTCGGAGAAAAATCCTGACCAAGTAAGGAAATGCAATATTTGCGGTGACAGTTTCGAGAACAACGAGATCCTACGGGAGCACAGAGCCAAGCACGTCACCGAGGGTATTCTAACGGAGGACGATCTGAGAGACATCGAGCCAAAATCCGAGGAAAAGAAAACAGGCGAGAAGACTGGCCGGAAGAGAAGAACCGACATCGTGGGACTCGAGTGTACCGAATGTAATAAACAGTACACTTCCCGAAAGGGTTTGCTGCGGCACATTCAAGTGCACGAGGGTAAGAAGTACCTATGCGACATATGTCCAAAGAAGTTTTACCGACGAGAACATCTGAAGATCCACGTGGCCAAGCACAACATGGTCAAACCGTACAAATGCACCCGTTGTACCAAGCGTTTCATCAAGGAGGAACAGCTCAACAATCATCTACCCAAACACGACCGCACTTTCAAAAAAAACAAGGAGACCGACAGCTCGAAAAGATTTCTGTGCGAGATCTGTAGCAAGAGCTTTACGCAGTCGACGACACTGATAGCGCATTTGCGCGCCCACAACGGCATCAAGCCGTTTGTGTGCGAGGTGTGCTCCAGGCCGTTCACCACCAATGCGTATTTGAAAATGCATATGCGCACGCACACGCAAGAACGCCCGTACATTTGTCAGTATTGCTCGCGAGCATTCGCGCGTGCTGACACGTTAGCAAATCATTTGACGTCACATACCGGCGAGGCCAAGTATCACTGCAAGTGTTGTCCAAAGAACTTCCGACGACTGAAGTCATTAAAGGAACACATGTTTATTCACACGGGTCAACGACCTTACGAATCGCAAGTAGTCAAGGCACAGAATATCAAGACAATCGCTATAGCGAGACAGGCCGACCCTACCACGGTCGCCACGACGCAACAAGTTATACAGCATCAGGAGTTAATAATGCCTCTAATCTTACCACTTACCGTCACTCTTACCGACGTTGGTGAGGAGGTAATACTACCCGAAGGTACAAAGATATTCACCACCACTTAA
Protein Sequence: MDAVEINTSDPPQGEDAIASPVKICRVCLLDNLMMRDLFAETEVASLSEKAMSFANVKMLPGDGLPAQVCCMCADKLESAYEFKLQVEQADSVLREKLEVGGIIKEELFLNEVEIHLDAERSDNMDEINVSADYGSTAVLPVESEADKNFLKNQLMMLEAEKLAETGEIQQGSQDNSQEITHEVSQSIEELQQELTSEDDNDMADVIEESRDEISNHENIIRSCTDAIPTEEHDYIMQQQCILPAEQLSLQEEIQQSVSVLEQDTMEHQETSIEQNQQIHPEQNQENQIEASQEIQAEQNQEILIEHKQEILIEQNQEDQAKQVEENEAEQHQNNKELLKELFKEEFKIDSNEPTVEQESSQNETRRSKRRLARRIFTERDSDEENYFENLNLSSRLKKAQADKTEKVFYMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQKVPTNVSMTKTPPSGKKANKCTYCGKEYLYIISFAKHIRQHEREREESKEDPMPLEVSFHEDENSLDFDNANRSDDECRKRKIGSTSDDAASDNDQDKKRKRSYVEEFACDKCPEKFDTKRDLQKHLLAHISFKCSVCNEEYETLEQLRNHRTKHVVEGVLSEQDLEEDIKQNIENNDENNKNENEENNGESTEESTKEFKCPTCSMMFSRKKALSRHIETTHSSTRSYECKICCQQFVRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDDDNTDYKVDGHYRRKRDATPKKYNYKKEFECATCNKRYSSKQALTKHMEQHVKEEKAEKAAEKVAEKLKKAALEKKETQKTSNTGDNDDDDDNDSDFESGLDWPMDSHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEDDLRDIEPKSEEKKTGEKTGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLNNHLPKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYESQVVKAQNIKTIAIARQADPTTVATTQQVIQHQELIMPLILPLTVTLTDVGEEVILPEGTKIFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126152;
90% Identity: iTF_01228516;
80% Identity: -