Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: -
Assembly: GCA_000187915.1
Location: NW:282925-289582[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0096 0.67 9.8 2.9 1 23 410 432 410 432 0.98

2 19 0.027 1.9 8.4 0.5 2 23 469 490 468 490 0.96

3 19 4.9e-06 0.00034 20.2 0.8 1 23 557 579 557 579 0.97

4 19 0.00024 0.017 14.8 1.2 1 23 582 604 582 604 0.98

5 19 3.1e-06 0.00022 20.8 1.3 1 23 649 672 649 672 0.98

6 19 0.0039 0.27 11.1 2.3 1 23 678 700 678 700 0.96

7 19 0.00045 0.031 14.0 0.7 1 20 706 725 706 730 0.94

8 19 1.3e-05 0.00091 18.8 1.3 1 23 801 823 801 823 0.97

9 19 0.00015 0.01 15.5 4.8 1 23 880 902 880 902 0.97

10 19 0.0002 0.014 15.1 0.7 1 20 907 926 907 928 0.94

11 19 0.033 2.3 8.1 0.3 2 23 939 960 939 960 0.97

12 19 2e-05 0.0014 18.2 0.6 2 23 999 1020 998 1020 0.97

13 19 1.8e-05 0.0013 18.4 1.6 1 23 1025 1047 1025 1047 0.95

14 19 0.00079 0.055 13.2 1.7 1 20 1053 1072 1053 1075 0.93

15 19 3.3e-06 0.00023 20.7 0.4 1 23 1091 1113 1091 1113 0.95

16 19 3.6e-07 2.5e-05 23.7 0.6 1 23 1119 1141 1119 1141 0.98

17 19 2.9e-05 0.002 17.8 0.2 1 23 1147 1169 1147 1169 0.97

18 19 0.017 1.2 9.0 6.9 1 23 1175 1197 1175 1197 0.96

19 19 0.0036 0.25 11.2 0.6 1 20 1203 1222 1203 1224 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0096	0.67	9.8	2.9	1	23	410	432	410	432	0.98
2	19	0.027	1.9	8.4	0.5	2	23	469	490	468	490	0.96
3	19	4.9e-06	0.00034	20.2	0.8	1	23	557	579	557	579	0.97
4	19	0.00024	0.017	14.8	1.2	1	23	582	604	582	604	0.98
5	19	3.1e-06	0.00022	20.8	1.3	1	23	649	672	649	672	0.98
6	19	0.0039	0.27	11.1	2.3	1	23	678	700	678	700	0.96
7	19	0.00045	0.031	14.0	0.7	1	20	706	725	706	730	0.94
8	19	1.3e-05	0.00091	18.8	1.3	1	23	801	823	801	823	0.97
9	19	0.00015	0.01	15.5	4.8	1	23	880	902	880	902	0.97
10	19	0.0002	0.014	15.1	0.7	1	20	907	926	907	928	0.94
11	19	0.033	2.3	8.1	0.3	2	23	939	960	939	960	0.97
12	19	2e-05	0.0014	18.2	0.6	2	23	999	1020	998	1020	0.97
13	19	1.8e-05	0.0013	18.4	1.6	1	23	1025	1047	1025	1047	0.95
14	19	0.00079	0.055	13.2	1.7	1	20	1053	1072	1053	1075	0.93
15	19	3.3e-06	0.00023	20.7	0.4	1	23	1091	1113	1091	1113	0.95
16	19	3.6e-07	2.5e-05	23.7	0.6	1	23	1119	1141	1119	1141	0.98
17	19	2.9e-05	0.002	17.8	0.2	1	23	1147	1169	1147	1169	0.97
18	19	0.017	1.2	9.0	6.9	1	23	1175	1197	1175	1197	0.96
19	19	0.0036	0.25	11.2	0.6	1	20	1203	1222	1203	1224	0.90

Sequence Information

Coding Sequence: ATGGACGCCGTGGAGATAAATACGTCGGATCCGCCGCAGGGCGAGGACGCGATCGCGTCCCCCGTCAAGATATGCCGCGTGTGTCTGCTCGACAATCTGATGATGCGCGATCTCTTCGCGGAGACCGAGGTCGCGTCCCTGTCGGAAAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGCGACGGTCTACCAGCACAAGTGTGCTGTATGTGTGCTGACAAGCTAGAGTCGGCGTACGAATTTAAGTTACAAGTGGAGCAAGCTGATAGTGTTCTTCGAGAGAAACTCGAGGTTGGAGGAATAATAAAGGAGGAATTGTTTCTTAACGAGGTTGAAATCCACTTAGATGCCGAGAGGAGTGACAATATGGATGAGATAAACGTTAGTGCTGATTATGGATCTACTGCAGTGTTGCCAGTGGAATCGGAAGCTGACaagaattttctgaaaaatcagTTAATGATGTTGGAAGCTGAAAAATTGGCAGAGACGGGAGAGATACAGCAAGGTTCACAAGACAATTCACAGGAAATTACACATGAAGTTAGTCAAAGTATTGAAGAATTGCAGCAAGAACTAACCAGCGAGGATGACAATGATATGGCGGATGTTATCGAGGAATCTAGAGATGAAGTATCCAATcacgaaaatattattcgaagTTGTACCGATGCGATCCCAACAGAAGAGCATGATTATATTATGCAGCAACAGTGTATCCTGCCTGCTGAACAACTTTCGTTGCAGGAAGAGATGCAGCAGAGCGTATCAGTACTTGAACAAGACACAATGGAACATCAAGAAACATCAATCGAGCAGAATCAACAGATTCATCCTGAGCAAAACCAAGAGAATCAGATCGAGGCATCTCAAGAAATTCAGGCTGAGCAAAACCAAGAGATTTTGATTGAACATAAACAAGAAATTCTGATTGAACAAAATCAAGAAGATCAAGCCAAACAAGTTCAGGAAAATGAAGCTGAgcaaaatcaaaataacaaGGAATTACTTAAGGAATTGTTCAaggaagaatttaaaatcgatAGTAATGAGCCAACAGTGGAGCAAGAATCATCTCAGAATGAAACCAGAAGAAGTAAACGAAGATTGGCACGTCGAATATTCACCGAGCGAGATTCCGACGAGGAGAACTATTTCGAAAATCTGAATCTCAGTTCTCGATTGAAAAAGGCGCAAGCGGACAAGACAGAGAAGGTCTTTTACATGTGTTATTTGTGTGACAAGCAATTTCTTTCAAAGAGCGTCTTGAAAGAACATATGCATTCCCACGAAGAGGTAAGAAAGACATTGTCGTTGAAGAAAACGCCAGAGAAACCGCAAAAGGTGCCGACCAATGTTTCCATGACGAAAACTCCGCCATCCGGAAAGAAAGCCAACAAGTGCACTTACTGTGGTAAAGAATATCTGTACATAATCTCGTTTGCTAAACACATTAGGCAACACGAGCGGGAGCGAGAGGAATCTAAAGAAGATCCGATGCCGCTCGAGGTATCGTTCCACGAGGATGAAAACAGTCTAGACTTTGACAACGCCAACAGATCGGATGATGAATGCAGAAAACGAAAAATAGGAAGTACATCCGACGACGCCGCGAGCGATAATGATCAAGATAAGAAGAGAAAGCGTAGTTACGTTGAGGAATTTGCGTGTGATAAATGTCCAGAGAAATTCGATACAAAACGCGACTTGCAGAAGCACTTGCTTACACATATTAGCTTCAAGTGCAGTGTGTGTAATGAGGAGTACGAAACCCTGGAGCAGCTGAGAAATCATCGAACGAAACACGTGGTCGAAGGCGTGCTCAGCGAGCAGGATTTGGAGGAGGACATAAAGCAGAACATCGAGAACAACGATGGAAACAACAAGAATGAGGACGAGGAGAATAACGGCGAATCTACTGAAGAATCTACGAAGGAATTCAAATGTCCGACATGTTCGATGATGTTCTCGCGCAAGAAAGCTCTCTCCAGACATATAGAGACGACACACTCTAGCACTCGTTCTTATGAATGCAAGATATGTTGTCAGCAGTTTGTTCGAAAGGATTTGTTACGAAGACATGCTGAACAGCATGCACGAGTAAAAACCTACAAGTGTACCCAATGCAATAAGACTTTCGGCAACGAACTGACTCTAAGAAATCATTTGGTTGCCACGAATCATAAGACGTTCATACATGGACAGGAATACGATCCGAATAAGCGTATAAAACGCGTGGCGGCGAAAGCGGCGCAGAAGATCATCGATAAGATCAAGACAGAGGATGGACTCGAGGAttacgacgacgatgacgacaatACCGATTATAAGGTAGACGGGCATTATCGCCGTAAACGCGATGCTACACCAAAgaagtataattataagaagGAATTTGAGTGTGCAACTTGTAACAAGAGATATAGTTCGAAACAAGCGCTGACGAAGCACATGGAGCAACATGTGAAGGAGGAGAAAGCGGAAAAGGCAGCGGAGAAAGTGGCGGAAAAGCTGAAGAAGGCCGCTTTGGAGAAGAAGGAGACGCAGAAAACTAGTAACACAGGCgataacgatgacgatgacgacaatGATTCTGATTTTGAAAGCGGCCTCGACTGGCCGATGGATAGTCATGAGTGCAGCACGTGCAAAAAACGATATAGTACGAAGAAGTCATTGTTGCGTCATCAGTTGTTACATGAGGAACCGAACTTTGAATGTGACATCTGCAACGTCAAGTTTTATCGCAAAGACAAGCTGAAGGCGCACTACGACAAGTGTTCGGAGAAAAATCCTGACCAAGTAAGGAAATGCAATATTTGCGGTGACAGTTTCGAGAACAACGAGATCCTACGGGAGCACAGAGCCAAGCACGTCACCGAGGGTATTCTAACGGAGGACGATCTGAGAGACATCGAGCCAAAATCCGAGGAAAAGAAAACAGGCGAGAAGACTGGCCGGAAGAGAAGAACCGACATCGTGGGACTCGAGTGTACCGAATGTAATAAACAGTACACTTCCCGAAAGGGTTTGCTGCGGCACATTCAAGTGCACGAGGGTAAGAAGTACCTATGCGACATATGTCCAAAGAAGTTTTACCGACGAGAACATCTGAAGATCCACGTGGCCAAGCACAACATGGTCAAACCGTACAAATGCACCCGTTGTACCAAACGTTTCATCAAGGAGGAACAGCTCAACAATCATCTACCCAAACACGACCGCACTTTCAAAAAAAACAAGGAGACCGACAGCTCGAAAAGATTTCTGTGCGAGATCTGTAGCAAGAGCTTTACGCAGTCGACGACACTGATAGCGCATTTGCGCGCCCACAACGGCATCAAGCCGTTTGTGTGCGAGGTGTGCTCCAGGCCGTTCACCACCAATGCGTATTTGAAAATGCATatgcgcacgcacacgcaggAACGCCCGTACATTTGTCAGTATTGCTCGCGAGCATTCGCGCGTGCTGACACGTTAGCAAATCATTTGACGTCACATACCGGCGAGGCCAAATATCACTGCAAGTGTTGTCCAAAGAACTTTCGACGACTGAAGTCATTAAAGGAACACATGTTTATTCACACGGGTCAACGACCTTACGAATGTCCGACTTGCGATAGGAAGTTCAACAATAATGGCAGTCGCTATGCGCACAGTAAGCGTTGCAAACAGAACCTTTTGCAGAATCAGAACCGAGCGCAGCAGATGATTCAACAAacgcagcagcaacaacagcaacagcagcagcaggtGCAGCAGCCTCAGCCTCAGCCGCAACCAATGCAGATACAGGTACAACAGGCGCAACCACATCCAGTCAGGCTGCATCAGGCTACAATCGGTCAAGCGCAAGTAGTCAAGGCACAGAATATCAAGACAATCGCTATAGCGAGACAGGCCGACCCTACCACGGTCGCCACGACGCAACAAGTTATACAGCATCAGGAGTTAATAATGCCTCTAATCTTACCACTTACCGTCACTCTTACCGACGTTGGTGAGGAGGTAATACTACCCGAAGGTACAAAGATATTCACCACCACTTAA
Protein Sequence: MDAVEINTSDPPQGEDAIASPVKICRVCLLDNLMMRDLFAETEVASLSEKAMSFANVKMLPGDGLPAQVCCMCADKLESAYEFKLQVEQADSVLREKLEVGGIIKEELFLNEVEIHLDAERSDNMDEINVSADYGSTAVLPVESEADKNFLKNQLMMLEAEKLAETGEIQQGSQDNSQEITHEVSQSIEELQQELTSEDDNDMADVIEESRDEVSNHENIIRSCTDAIPTEEHDYIMQQQCILPAEQLSLQEEMQQSVSVLEQDTMEHQETSIEQNQQIHPEQNQENQIEASQEIQAEQNQEILIEHKQEILIEQNQEDQAKQVQENEAEQNQNNKELLKELFKEEFKIDSNEPTVEQESSQNETRRSKRRLARRIFTERDSDEENYFENLNLSSRLKKAQADKTEKVFYMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQKVPTNVSMTKTPPSGKKANKCTYCGKEYLYIISFAKHIRQHEREREESKEDPMPLEVSFHEDENSLDFDNANRSDDECRKRKIGSTSDDAASDNDQDKKRKRSYVEEFACDKCPEKFDTKRDLQKHLLTHISFKCSVCNEEYETLEQLRNHRTKHVVEGVLSEQDLEEDIKQNIENNDGNNKNEDEENNGESTEESTKEFKCPTCSMMFSRKKALSRHIETTHSSTRSYECKICCQQFVRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDDDNTDYKVDGHYRRKRDATPKKYNYKKEFECATCNKRYSSKQALTKHMEQHVKEEKAEKAAEKVAEKLKKAALEKKETQKTSNTGDNDDDDDNDSDFESGLDWPMDSHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEDDLRDIEPKSEEKKTGEKTGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLNNHLPKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTQQQQQQQQQQVQQPQPQPQPMQIQVQQAQPHPVRLHQATIGQAQVVKAQNIKTIAIARQADPTTVATTQQVIQHQELIMPLILPLTVTLTDVGEEVILPEGTKIFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126152;
90% Identity: iTF_01229183;
80% Identity: -