Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: ZNF236
Assembly: GCA_017141365.1
Location: JAEVLP010004854.1:116163-123208[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.00014 0.021 16.2 0.6 2 23 53 74 53 74 0.98

2 23 2.2e-06 0.00033 21.8 0.7 1 23 95 117 95 117 0.99

3 23 1e-05 0.0015 19.8 1.0 1 20 123 142 123 145 0.95

4 23 1.2e-05 0.0018 19.5 1.2 1 23 151 174 151 174 0.96

5 23 0.018 2.6 9.6 2.1 1 23 183 206 183 206 0.97

6 23 1.9e-07 2.8e-05 25.2 0.3 1 23 329 351 329 351 0.98

7 23 0.00055 0.082 14.3 0.8 1 23 357 379 357 379 0.99

8 23 0.0014 0.21 13.0 3.2 1 23 385 407 385 407 0.97

9 23 6.7e-05 0.01 17.2 3.2 1 23 411 433 411 433 0.98

10 23 0.019 2.9 9.4 7.3 1 23 488 510 488 510 0.97

11 23 3.2e-05 0.0047 18.2 4.9 1 23 516 538 516 538 0.99

12 23 9.2e-06 0.0014 19.9 1.1 1 23 544 566 544 566 0.98

13 23 0.0015 0.22 13.0 8.3 1 23 572 595 572 595 0.97

14 23 0.35 52 5.5 1.9 2 23 952 973 951 973 0.93

15 23 1.2e-05 0.0018 19.5 2.6 1 23 979 1001 979 1001 0.99

16 23 0.058 8.6 7.9 1.3 2 23 1008 1029 1007 1029 0.97

17 23 2.8e-08 4.2e-06 27.8 1.4 2 23 1103 1124 1102 1124 0.98

18 23 0.00018 0.026 15.9 4.5 1 23 1130 1152 1130 1152 0.99

19 23 0.00029 0.044 15.2 4.0 1 23 1158 1180 1158 1180 0.97

20 23 3.4e-05 0.005 18.1 2.6 1 23 1186 1208 1186 1208 0.98

21 23 2.2e-05 0.0033 18.7 0.7 2 23 1420 1441 1419 1441 0.97

22 23 6.4e-06 0.00095 20.4 4.2 1 23 1447 1469 1447 1469 0.98

23 23 0.00059 0.087 14.2 8.5 1 23 1475 1498 1475 1498 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.00014	0.021	16.2	0.6	2	23	53	74	53	74	0.98
2	23	2.2e-06	0.00033	21.8	0.7	1	23	95	117	95	117	0.99
3	23	1e-05	0.0015	19.8	1.0	1	20	123	142	123	145	0.95
4	23	1.2e-05	0.0018	19.5	1.2	1	23	151	174	151	174	0.96
5	23	0.018	2.6	9.6	2.1	1	23	183	206	183	206	0.97
6	23	1.9e-07	2.8e-05	25.2	0.3	1	23	329	351	329	351	0.98
7	23	0.00055	0.082	14.3	0.8	1	23	357	379	357	379	0.99
8	23	0.0014	0.21	13.0	3.2	1	23	385	407	385	407	0.97
9	23	6.7e-05	0.01	17.2	3.2	1	23	411	433	411	433	0.98
10	23	0.019	2.9	9.4	7.3	1	23	488	510	488	510	0.97
11	23	3.2e-05	0.0047	18.2	4.9	1	23	516	538	516	538	0.99
12	23	9.2e-06	0.0014	19.9	1.1	1	23	544	566	544	566	0.98
13	23	0.0015	0.22	13.0	8.3	1	23	572	595	572	595	0.97
14	23	0.35	52	5.5	1.9	2	23	952	973	951	973	0.93
15	23	1.2e-05	0.0018	19.5	2.6	1	23	979	1001	979	1001	0.99
16	23	0.058	8.6	7.9	1.3	2	23	1008	1029	1007	1029	0.97
17	23	2.8e-08	4.2e-06	27.8	1.4	2	23	1103	1124	1102	1124	0.98
18	23	0.00018	0.026	15.9	4.5	1	23	1130	1152	1130	1152	0.99
19	23	0.00029	0.044	15.2	4.0	1	23	1158	1180	1158	1180	0.97
20	23	3.4e-05	0.005	18.1	2.6	1	23	1186	1208	1186	1208	0.98
21	23	2.2e-05	0.0033	18.7	0.7	2	23	1420	1441	1419	1441	0.97
22	23	6.4e-06	0.00095	20.4	4.2	1	23	1447	1469	1447	1469	0.98
23	23	0.00059	0.087	14.2	8.5	1	23	1475	1498	1475	1498	0.98

Sequence Information

Coding Sequence: ATGTCGTTCGCCGTAGACTGCCTGAATTTCGCGCTTCTCTTTATCTGCACGCGCGTGTTCCATCTTGCTCTTGGTATCAGCGCTCAGTATTATAAGGCTCAATTGGACGCGCATTTGAAGCTTCACGGGGAAAAGTGGGCGAGTGAGGATGTGCGAAAATGTAAATTGTGCAACAAGCAATTTGTGCAACCCGCGCTTTACCGAATGCACATTCGCGAGCATTACAGACTACAAACGAAGATAGTAAAGCAAACCAAGAGGGGAACGAAACACAAAACAATGTACAAATGTACCATATGCTTGAAGATCTTCCAAAAACCGAGCCAATTGATGCGGCATATTAGAGTACACACTGGAGAAAAGCCATTTAAGTGTACGATTTGCAACAGAGCGTTTACTCAAAAGAGTTCATTGCAAATTCACACATGGCAACACAAGGGTATTCGGCCGCACACTTGTAGCCTCTGTAATGCCAAGTTTAGTCAAAAAGGGAATCTAAAGGCGCATATACTCAGAGTGCACAATGCACCAGAAGGTGAACCTACGTACGCCTGTTCCTTTTGCTCTTGCATTTTCAAGAAGTTAGGCAGTTTAAACGGGCACATAAAGCGAATGCATTCTGTGTCCGCGGAGGAATCCGCTGTCAAGCCCACGGAAGATAATTCCAGTATCTCATCGGAAGCTGACATGCGTGCGACCGTTGACAGCGTTATATCGCAATTGGCGTCTCTAGAATCCGCCGTAAACAATACCACGGATTCGATAAGGACCACAACGTTAAATGTAGAACAGAACGATATCCTGCAACAAGCGTTAAAAAACAGTGGCTTGCCGAATAAAAATGAAGTAATTTCGAAAGGAACTACAGAACCGAAAAAAACGGATTCACCAACGTCATATGTCACGCTATTAGACAGAACCGCTGGGGGTACTTCAAAGAAGTATCTCACCATAAAGCAACGCTGTATAGGAAATGTCCGATGGTATGCATGTTCGTATTGTCCAAAGGAATTCAAAAAGCCGTCGGACTTGATACGCCATTTGCGAGTACACACTCAAGAGAAACCTTTCAAGTGTATGTATTGTGTGCGTTCTTTCGCATTAAAGTCGACAATGATAGCGCACGAGCGAACTCACACTGGAGTGAAAAAATACGCTTGCGAGTCCTGTGATAAAACTTTCGCTTGTCATAGCAGCCTTACCGCTCACATGAAATTACATACGAAATCGCATAAATGCAACATATGCGACAAATCATTTAGCACGAATAACATCCTGAAAAACCACGTGAAAAGCCATACGCAAGAAAAGTCCAAGATATCGCCGGAGGCAGAGAGTCTAGTGCCGCAAGTGGTATTGCAAGAACCGCTCGTCATTAGCGACACCGGCAATAAAATCAGCGTTGCGCAAGTGCAGTCGAAACAAAAACAATTATACGAAAGCGTTGGCGTGGCCAGGCCGCACGAGTGTTTCGTCTGTCATGCGGCGTTTAGAAAAGTCAGCCATCTGAAGCAACATTTTCGCAGGCATACGGGCGAACGTCCTTACAAATGTTCCAAGTGCGACAGGAGATTTACGTCGAATAGTGTCCTAAAATCTCATCTGCACACGCACGAGGACGCGAGGCCATACAGTTGTTCAGTATGCGATGTAAAATTCTCGACGCAGAGCAGCATGAAGAGGCACTTAGTCACGCATAGCAATAAAAGGCCGTATATGTGTCCGTACTGCCACAAGACATTTAAAACATACGTGAATTGTCGGAAACACATCAAAAGGAAGCACGGACTCGAGCTGGCGCAACGGCAATTGGAGGAACAAAAGACGCAGGAGCAAAAGGAGTCACAGCCTTTGAGCGACGATAAAACAGCTATCCCGGCATTATCGGAAAACATCACCCTCACCGAAGATATGGAAGTGTCGTTTCAACCGCAAATGGCGCCAGATTTTACTCAAGCTTTCTCTGATCAATTTCATCAAAATATCAGCGAGAAAGAAAAATCTTTCTTATTGACGGATAACACAATGCCATCAATAGTGAATCAAAATTTATCTCTCGACACTAATTTAACATCACAAACTCTACACGCTGATGAAACCGGTACCATCACGTTACCTCATTATTCAGGGGATCAAACTTTTACGCCAGAAAGCATGCGGGAACTCGAGGAAACACTGAATCTAAAGCAACTGCTTAATATCGGCGTGAATCTCGGATTGGAAACAAATAATCTACCAAGACAGATGGACGAAACGAATACGAGTTCTCTTAATAATTCTAGGGAACAACCGGTGCTCAATATTATATACGAGCATAACAAGAACATGGAATCATCGAGCAATACTATATTTATGCCACAATTTGATTCGTTGGATATGAATCAAATTACGTTACAGACGGACAACGATATAGATATCAGTTTAAATCCGAGTAATGTCACGAACATATCCAATATCTTGCCCCGATCCGTGCGAAGTAACCAGCAAGAGGATCAACAAGCCATTCCTGTTAGTACCATCAGCAATATAGATACTTCTCAAATTACAAGAAATACTCATCTAGTGATAATAAATTCTAAGGAGAACTGCTCAGAATTGATGAGACTCTCGCAAGTATGCCCGTCGAAGTATTCGAAAGTTATTGCGAAAGCAGACACTACAAATGAATCGGAAATACAAGGTGTGAATGAACATGAAAAAACAACGCAGAAAAGTAACTCTGTGTCATACGAAAATGAGGATGAGAAAAATTCTTTGTTTATGAAGAATTTTCAAAGTGCAATGAATTCGGAGATACTTATCTCTTCTGATATGGATAATCCTATTAAAATATCAGAGTGCAATACTCTGTTGCAGTGCCATATGTGCGGCAATCAAGGTTTCACGACAGAAAGATTAAAGGAACATCTGAGATCTCATCGCGGTGCCAAAGAGTACGAATGCTCGGAATGTTCTCAACGATTCTGTACGAACGGCGGTCTCAGTCGGCACATGAAAATGCACACGAACAAGCAACGGTGGAAATGTACAACCTGCCAAAAGATACTGGGGAGTAAACTGCAATTGAAATCTCACAGCAAAATGCATACCGAGTCTTGGAATGTTTCATCCATGGAATCAGACAGCTCTCAAAAGGAACTTACTTCCTCGAATTCCGGATTATCATCGATACCGACACTGGATGTCCGAATAAACGCGGACTCCTCCGTTTCCGAGAAAGTTTTGATGGATGCAGTTGCTGAGAGGAAGAGCATGGACCACGCGGATGAGAACGTGGAAAAGAAAGAAACAAGGGAATATACTAATAAATGCAAGTATTGTCCAAAAACATTTCGTAAACCGAGTGATCTTATTAGACACATTCGCACGCATACAGGCGAACGACCGTATCAGTGTGAACACTGTAGCAAGAGTTTCGCAGTCAAATGCACTCTGGATTCGCATATGAAGGTTCACACGGGCAAGAAGACGTTTTGCTGCCATGTCTGTAGCAGCATGTTCGCTACGAAAGGCAGTTTAAAAGTCCATATGCGATTGCATACTGGTTCGAAGCCATTCAAATGTCCTGTGTGCGATCTACGATTCCGTACCTCAGGTCACAAGAAGGTGCATATGCTGAAACATGCGAGAGAGCATAAGGGCGGCACAAAACGCAAACCGAAGCATTCAAAGATCGCGGCGGTAGCGGAAGCGGTAGCCAATCTCGAAAAAATCGGCAATAATTCTAATTTAGATTATTCCTCGTTGGAACAGACAGTAAATCTTGGTACTACGATTCAGCTGTCGAATCAAATCGCATTCAACAATACCGATGCGACAATTCTCAACAACAACAGCAACATGCTTTCCGTGAACGAGAACAATGAGTTGGTACAGTTCTTGTTGGCGAACGTTGGTCTCGTCACTATTCAAACAGACGATCCTCTTCTGACACAATCAGCGACTAATAGTTCCGATACCATCAGCGCTGGAGTACCAACCAATGTGATTGAATTGGTTAATCAAGATCCTTTCCAAGAAGCTTGTAATTTAAATAACGCCAATCACGTGGTGATAACTAGCCAAGTGCCGACAGAGACGACAATCGCGAATGCGACCAATGCGACGGTTCTTGCAATGAACAATTATATGCCTCCTGTTTCTATGGTACAAATACAGAATCAAAGCGTAAACGGTATTGACGGTGTGTCTGAAATAAAGATGAGCGATCAAACGACGGCAACGACAGCAAAAGCTTCTCCGCAATCTTCGAGGAAGGAGTGCGACGTGTGTGGTAAAACGTTTATGAAACCCTATCAAATGGAACGGCACAAGCGCATTCACACAGGGGAACGTCCATACAAGTGCGAGCAATGCGGCAAGTCATTTGCACAGAAGTTTACATTGCAGTTGCATCAGAAGCACCATACTGGTGACCGACCATACTCTTGCCCGCACTGCAAGCACCTGTTCACGCAGAAATGCAACTTGCAGACGCATATGAAACGAGTTCATCAACTGGTCATGCTCGATGTCAAAAAGCTAAAGAGCGGCCAGCAGATGTTGGGTGCACTTTTACAGGACAATCAAAACAATGATGCCAAATTGGTGAGCCTGGATGATATACTGGTGGTAGATTTTCTCAAGTGA
Protein Sequence: MSFAVDCLNFALLFICTRVFHLALGISAQYYKAQLDAHLKLHGEKWASEDVRKCKLCNKQFVQPALYRMHIREHYRLQTKIVKQTKRGTKHKTMYKCTICLKIFQKPSQLMRHIRVHTGEKPFKCTICNRAFTQKSSLQIHTWQHKGIRPHTCSLCNAKFSQKGNLKAHILRVHNAPEGEPTYACSFCSCIFKKLGSLNGHIKRMHSVSAEESAVKPTEDNSSISSEADMRATVDSVISQLASLESAVNNTTDSIRTTTLNVEQNDILQQALKNSGLPNKNEVISKGTTEPKKTDSPTSYVTLLDRTAGGTSKKYLTIKQRCIGNVRWYACSYCPKEFKKPSDLIRHLRVHTQEKPFKCMYCVRSFALKSTMIAHERTHTGVKKYACESCDKTFACHSSLTAHMKLHTKSHKCNICDKSFSTNNILKNHVKSHTQEKSKISPEAESLVPQVVLQEPLVISDTGNKISVAQVQSKQKQLYESVGVARPHECFVCHAAFRKVSHLKQHFRRHTGERPYKCSKCDRRFTSNSVLKSHLHTHEDARPYSCSVCDVKFSTQSSMKRHLVTHSNKRPYMCPYCHKTFKTYVNCRKHIKRKHGLELAQRQLEEQKTQEQKESQPLSDDKTAIPALSENITLTEDMEVSFQPQMAPDFTQAFSDQFHQNISEKEKSFLLTDNTMPSIVNQNLSLDTNLTSQTLHADETGTITLPHYSGDQTFTPESMRELEETLNLKQLLNIGVNLGLETNNLPRQMDETNTSSLNNSREQPVLNIIYEHNKNMESSSNTIFMPQFDSLDMNQITLQTDNDIDISLNPSNVTNISNILPRSVRSNQQEDQQAIPVSTISNIDTSQITRNTHLVIINSKENCSELMRLSQVCPSKYSKVIAKADTTNESEIQGVNEHEKTTQKSNSVSYENEDEKNSLFMKNFQSAMNSEILISSDMDNPIKISECNTLLQCHMCGNQGFTTERLKEHLRSHRGAKEYECSECSQRFCTNGGLSRHMKMHTNKQRWKCTTCQKILGSKLQLKSHSKMHTESWNVSSMESDSSQKELTSSNSGLSSIPTLDVRINADSSVSEKVLMDAVAERKSMDHADENVEKKETREYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYQCEHCSKSFAVKCTLDSHMKVHTGKKTFCCHVCSSMFATKGSLKVHMRLHTGSKPFKCPVCDLRFRTSGHKKVHMLKHAREHKGGTKRKPKHSKIAAVAEAVANLEKIGNNSNLDYSSLEQTVNLGTTIQLSNQIAFNNTDATILNNNSNMLSVNENNELVQFLLANVGLVTIQTDDPLLTQSATNSSDTISAGVPTNVIELVNQDPFQEACNLNNANHVVITSQVPTETTIANATNATVLAMNNYMPPVSMVQIQNQSVNGIDGVSEIKMSDQTTATTAKASPQSSRKECDVCGKTFMKPYQMERHKRIHTGERPYKCEQCGKSFAQKFTLQLHQKHHTGDRPYSCPHCKHLFTQKCNLQTHMKRVHQLVMLDVKKLKSGQQMLGALLQDNQNNDAKLVSLDDILVVDFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523538;
90% Identity: iTF_01228513;
80% Identity: -