Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: ZNF236
Assembly: GCA_000187915.1
Location: NW:1121105-1137067[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0018 0.12 12.1 1.4 2 23 183 204 182 204 0.96

2 27 9.3e-05 0.0065 16.2 0.6 1 23 210 232 210 232 0.98

3 27 2.3e-05 0.0016 18.1 0.3 2 23 238 259 238 259 0.97

4 27 0.0053 0.37 10.6 0.2 3 23 267 287 265 287 0.96

5 27 0.00011 0.0077 15.9 0.6 2 23 298 319 298 319 0.98

6 27 1.8e-06 0.00012 21.6 0.7 1 23 340 362 340 362 0.99

7 27 8e-06 0.00056 19.5 1.0 1 20 368 387 368 390 0.95

8 27 9.6e-06 0.00067 19.3 1.2 1 23 396 419 396 419 0.96

9 27 0.014 0.97 9.3 2.1 1 23 428 451 428 451 0.97

10 27 1.5e-07 1e-05 25.0 0.3 1 23 575 597 575 597 0.98

11 27 0.00044 0.03 14.0 0.8 1 23 603 625 603 625 0.99

12 27 0.00046 0.032 14.0 3.1 1 23 631 653 631 653 0.97

13 27 5.3e-05 0.0037 16.9 3.2 1 23 657 679 657 679 0.98

14 27 0.015 1.1 9.2 7.3 1 23 734 756 734 756 0.97

15 27 2.5e-05 0.0018 18.0 4.9 1 23 762 784 762 784 0.99

16 27 7.3e-06 0.00051 19.6 1.1 1 23 790 812 790 812 0.98

17 27 0.0012 0.082 12.7 8.3 1 23 818 841 818 841 0.97

18 27 0.079 5.5 7.0 2.1 2 23 1198 1219 1197 1219 0.94

19 27 9.4e-06 0.00066 19.3 2.6 1 23 1225 1247 1225 1247 0.99

20 27 0.046 3.2 7.7 1.3 2 23 1254 1275 1253 1275 0.97

21 27 2.3e-08 1.6e-06 27.5 1.4 2 23 1349 1370 1348 1370 0.98

22 27 0.00014 0.0098 15.6 4.5 1 23 1376 1398 1376 1398 0.99

23 27 0.00023 0.016 14.9 4.0 1 23 1404 1426 1404 1426 0.97

24 27 2.7e-05 0.0019 17.9 2.6 1 23 1432 1454 1432 1454 0.98

25 27 1.8e-05 0.0012 18.4 0.7 2 23 1702 1723 1701 1723 0.97

26 27 5.1e-06 0.00035 20.1 4.2 1 23 1729 1751 1729 1751 0.98

27 27 0.00047 0.032 14.0 8.5 1 23 1757 1780 1757 1780 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0018	0.12	12.1	1.4	2	23	183	204	182	204	0.96
2	27	9.3e-05	0.0065	16.2	0.6	1	23	210	232	210	232	0.98
3	27	2.3e-05	0.0016	18.1	0.3	2	23	238	259	238	259	0.97
4	27	0.0053	0.37	10.6	0.2	3	23	267	287	265	287	0.96
5	27	0.00011	0.0077	15.9	0.6	2	23	298	319	298	319	0.98
6	27	1.8e-06	0.00012	21.6	0.7	1	23	340	362	340	362	0.99
7	27	8e-06	0.00056	19.5	1.0	1	20	368	387	368	390	0.95
8	27	9.6e-06	0.00067	19.3	1.2	1	23	396	419	396	419	0.96
9	27	0.014	0.97	9.3	2.1	1	23	428	451	428	451	0.97
10	27	1.5e-07	1e-05	25.0	0.3	1	23	575	597	575	597	0.98
11	27	0.00044	0.03	14.0	0.8	1	23	603	625	603	625	0.99
12	27	0.00046	0.032	14.0	3.1	1	23	631	653	631	653	0.97
13	27	5.3e-05	0.0037	16.9	3.2	1	23	657	679	657	679	0.98
14	27	0.015	1.1	9.2	7.3	1	23	734	756	734	756	0.97
15	27	2.5e-05	0.0018	18.0	4.9	1	23	762	784	762	784	0.99
16	27	7.3e-06	0.00051	19.6	1.1	1	23	790	812	790	812	0.98
17	27	0.0012	0.082	12.7	8.3	1	23	818	841	818	841	0.97
18	27	0.079	5.5	7.0	2.1	2	23	1198	1219	1197	1219	0.94
19	27	9.4e-06	0.00066	19.3	2.6	1	23	1225	1247	1225	1247	0.99
20	27	0.046	3.2	7.7	1.3	2	23	1254	1275	1253	1275	0.97
21	27	2.3e-08	1.6e-06	27.5	1.4	2	23	1349	1370	1348	1370	0.98
22	27	0.00014	0.0098	15.6	4.5	1	23	1376	1398	1376	1398	0.99
23	27	0.00023	0.016	14.9	4.0	1	23	1404	1426	1404	1426	0.97
24	27	2.7e-05	0.0019	17.9	2.6	1	23	1432	1454	1432	1454	0.98
25	27	1.8e-05	0.0012	18.4	0.7	2	23	1702	1723	1701	1723	0.97
26	27	5.1e-06	0.00035	20.1	4.2	1	23	1729	1751	1729	1751	0.98
27	27	0.00047	0.032	14.0	8.5	1	23	1757	1780	1757	1780	0.98

Sequence Information

Coding Sequence: ATGTTAACGGAACAGAATATGATTATGGAGCTGACTGATTCCAGTGATACAATGCCAATTGGTTTTATTACAACAGACGATGGTCAGACATTATTGGCAGTGGGTGaacatGAAGATGGTATATTAGAATTCATGGCGACGCCTATTACATTAATGCCACAAAATAATGTGGTGTCTCCAGCACTAATAAAAACTATGGATggaagttttattttacatccaCCTGTTCTTCAATTGAATGTAGAAGGTCTGCCTGGAACTGTGATGCAACAAACAAACCTACTGCCACTAATACAACATTTTGAGAATGGGTCTTCAGTAACGGAGCAGCTTAAAGTGCAGGATACAAATGAATGTGTTGTTACAGAATCTTTGTTACCTATTACTAGAGATAATAGCGATGTGTTATCGATCAAGGAACAATCGACAATTGATAATCATGCTAAAAGCAGATCTACGCCTGTATCTGCGATACAAAACGTCTGCAACAGATCCCCAGGAAGACCGAAAAAGACTGGGATAACTTCACAAaatATACAGTCTCTGAAATGTGATATATGCAGACAAGAATTTACTAAACAGACAGTGTATCGTAGACATATGGAAAATCATGCCGAGGAAAAACCACATAGATGTCCGAAATGTCCAGCATCATTTAATATTCCAACAAATTTCACGCTTCATATGGCAACGCATAATACCGGCGATCCAAAATGTCCCGAATGCGGTAGAAAATATGCCAGAATGGCGAGTCTGAAATCTCACATGTTGCTACATGAGAAGGAGGAGAATCTCTTTTGCACGGAATGCGAAGACGCCTTTTCGACAAAGGCTCAATTGGACGCGCATTTGAAGCTTCACGGGGAAAAGTGGGCGAGTGAGGATGtgcgaaaatgtaaattgtgcAACAAGCAATTTGTGCAACCCGCGCTTTACCGAATGCACATTCGCGAGCATTACAGACTACAAACGAAGATAGTAAAGCAAACCAAGAGGGGAACGAAACACAAAACAATGTACAAATGTACCATATGCTTGAAGATCTTCCAAAAACCGAGCCAATTGATGCGGCATATTAGAGTACACACTGGAGAAAAGCCATTTAAGTGTACGATTTGCAACAGAGCGTTTACTCAAAAGAGTTCATTGCAAATTCACACATGGCAACACAAGGGTATTCGGCCGCACACTTGTAGCCTCTGTAATGCCAAGTTTAGTCAAAAagGGAATCTAAAGGCGCATATACTCAGAGTGCACAATGCACCAGAAGGTGAACCTACGTACGCCTGTTCCTTTTGCTCTTGCATTTTCAAGAAGTTAGGCAGTTTAAACGGGCACATAAAGCGAATGCATTCTGTGTCCGCGGAGGAATCCGCTGTCAAGCCCACGGAAGATAATTCCAGTATCTCATCGGAAGCTGACATGCGTGCGACCGTTGACAGCGTTATATCGCAATTGGCGTCTCTAGAATCCGCCGTAAGCAATACCACGGATTCGATAAGGCCCACAACGTTAAATGTAGAAGAGAACGATATCCTGCAACAAGCGTTAAAAAACAGTGGCTTgccgaataaaaatgaagtaaTTTCGAAAGCAGGAACTACAGAACCGAAAAAAACGGATTCACCAACGTCATATGTCACGCTATTAGACAGAACCGCTGGGGGTACTTCAaaGAAGTATCTCACCATAAAGCAACGCTGTATAGGAAATGTCCGATGGTATGCATGTTCGTATTGTCCAAAGGAATTCAAAAAGCCGTCGGACTTGATACGCCATTTGCGAGTACACACGCAAGAGAAACCTTTCaagTGTATGTATTGTGTGCGTTCTTTCGCATTAAAGTCGACAATGATAGCGCACGAGCGAACTCACACTGGAGTGAAAAAATACGCTTGCGAGTCCTGTGATAAAACTTTCGCTTGTCATAGCAGCCTTACCGCTCACATGAGaTTACATACGAAACCGCATAAATGCAACATATGCGACAAATCATTTAGCACGAATAACATCCTGAAAAACCACGTGAAAAGTCATACGCAAGAAAAATCCAAGATATCGCCGGAAGCACAGAGTCTAGTGCCGCAAGTGGTATTGCAAGAACCGCTCGTCATTAGCGACACCGGCAATAAAATCAGCGTTGCGCAAGTGCAGTCGaaacaaaaacaattataCGAAAGCGTTGGCGTGGCCAGGCCGCACGAGTGTTTCGTCTGTCATGCGGCGTTTAGAAAAGTCAGCCATCTGAAGCAACATTTTCGCAGGCATACGGGCGAACGTCCTTACAAATGTTCCAAGTGCGACAGGAGATTTACGTCGAATAGCGTCCTAAAATCTCATCTGCACACGCACGAGGACGCGAGGCCATACAGTTGTTCAGTATGCGATGTAAAATTCTCGACGCAGAGCAGCATGAAGAGGCACTTAGTCACGCATAGCAATAAAAGGCCGTATATGTGTCCGTACTGCCACAAGACATTTAAAACATACGTGAATTGTCGGAAACACATCAAAAGGAAGCACGGACTCGAGCTGGCGCAACGGCAATTGGAGGAACAAAAGACGCAGGAGCAAAAGGAGTCACAGCCTTTGAGCGACGATAAAACAGTTATCCCGGCATTATCGGAAAACATCACCCTCACCGAAGATATGGAAGTGTCGTTTCAACCGCAAATGGCGCCAGATTTTACTCAAGCTTTCTCTGatcaatttcatcaaaatatcagcgaaaaagaaaaatctttcttattaaCGGATAACACAATGCCATCAATAGTGAATCaaaatttatctctCGACACTAATTTAACATCACAAACTCTACACGCTGATGAAACCGGTACCATCACGTTACCTCATTATTCAGGGGATCAAACTTTTACGCCAGAAAGCATGCGGGAACTCGAGGAAACTCTGAATCTAAAGCAACTGCTTAATATCGGCGTGAATCTCGGATTGGAAACAAATAATCTACCAAGGCAGATGGACGAAACGAATACGAGTTCTCTTAATAATTCTAGGGAACAACCGGTGctcaatattatatacgagCATAACAAGAACATGGAATCATCGAGCAATACTATATTTATGCCACAATTTGATTCATTGGATATGAATCAAATTACGTTACAGACGGACAACGATATAGACATCGGTTTAAATCCGAGTAATGTCACGAACATATCCAATATCTTGCCCCGATCCGTGCGAAGTAATCAGCAAGAGGATCAACAAGCTATTCCTGTTAGTACCATCAGCAATATAGATACTTCtcaaattacaagaaatactCATCTAGTGGTAATAAATTCTAAGGAGAACTGCTCAGAATTGATGAGACTCTCGCAAGTATGCCCGTCGAAGTATTCGAAAGTTATTGCGAAAGCAGACACTACAAATGAATCGGAAATACAAGGTGTGAATGAACATGAAAAAACAACGCAGAAAAGTAACTCTGTGTCATACGAAAATGAGGATgagaaaaattctttgtttatGAAGAATTTTCAAAGTGCAATGAATTCGGAGATACTTATCTCTTCTGATATGGATAATCCTATTAAAATATCAGAGTGCAATACTCTGTTGCAGTGCCATATGTGCGGCAATCAAGGTTTCAcgacagaaaaattaaagGAACATCTGAGATCTCATCGCGGTGCCAAAGAGTACGAATGCTCGGAATGTTCTCAACGATTCTGTACGAACGGCGGTCTCAGTCGGCACATGAAAATGCACACGAACAAGCAacgGTGGAAATGTACAACCTGCCAAAAGATACTGGGGAGTAAACTGCAATTGAAATCTCACAGCAAAATGCATACCGAGTCTTGGAATGTTTCATCCATGGAATCGGACAGCTCTCAAAAGGAACTTACTTCCTCGAATTCCGGATTACCATCGATACCGACACTGGATGTCCCAATAAACGCGGACTCCTCCGTTTCCGAGAAAGTTTTGATGGATGCAGTTGCTGAGAGGAAGAGCATGGACCACGCGGatGAGAAcgtggaaaagaaagaaacaaggGAATATACTAATAAATGCAAGTATTGTCCAAAAACATTTCGTAAACCGAGTGATCTTATTAGACACATTCGCACGCATACAGGCGAACGACCGTATCAGTGTGAACACTGTAGCAAGAGTTTCGCAGTCAAGTGCACTCTGGATTCGCATATGAAGGTTCACACGGGCAAGAAGACATTTTGCTGCCATGTCTGTAGCAGTATGTTCGCTACGAAAGGCAGTTTAAAAGTCCATATGCGATTGCATACTGGTTCGAAGCCATTCAAATGTCCTGTGTGCGATCTACGATTCCGTACCTCAGGTCACAAGAAGGTGCACATGCTGAAACATGCGAGAGAACATAAGGGCGGCACAAAACGCAAACCGAAGCATTCAAAGATCGCGGCGGTAGCGGAAGCGGTAGCCAATCTCGAAAAAATCGGCAATAATTCAGTGGAGAATACCTCAATGACCACAACAGCAATAACGGCGACAACAACgacgataacgacgacgacggcgacaacTGTGACTAATGTTGAGGCCACGCCATCGCAGAATTTAGATTATTCCTCGTTGGAGCAGACAGTAAATCTTGGTACTACGATTCAGCTGTCGAATCAAATCGCATTCAACAATACCGATGCGACAACAATTctcaacaacaacagcaacatgCTTTCCGTGAACGAGAACAATGAGTTGGTACAGTTCTTGTTGGCGAACGTTGGTCTCGTCACTATTCAAACAGACGATCCTCTTCTGACACAATCAGCGACTAATAGTTCCGATACCATCAGCGCTGGAGTACCAACCAATGTAATTGAATTGGTTAATCAAGATCCTTTCCAAGAagcttgtaatttaaataacgccAATCACGTCGTGATAACTAGCCAAGTGCCGACAGAGACGACAATCGCGAATGCGACCAATGCGACAGTTCTTGCAATGAACAATTATATGCCTCCTGTTTCTATGGTACAAATACAGAATCAAAGCGTAAACGGTATTGACGGTGTGTCTGAAATAAAGATGAGCGATCAAACGACGGCAACGACAGCAAAAGCTTCTCCGCAATCTTCGAGGAAGGAGTGCGACGTGTGTGGTAAAACGTTTATGAAACCCTATCAAATGGAACGGCACAAGCGCATTCACACAGGGGAACGTCCATACAAGTGCGAGCAATGCGGCAAGTCATTTGCACAGAAGTTTACATTGCAGTTGCATCAGAAGCACCATACTGGTGACCGACCATACTCTTGCCCGCACTGCAAGCACCTGTTCACGCAGAAATGCAACTTGCAGACGCATATGAAACGAGTCCATCAACTGGTCATGCTCGATGTCAAAAAGCTAAAGAGCGGCCAGCAGATGTTGGGTGCACTTTTACAAGACAATCAAAACAATGATGCCAAACTGGTGAGCCTGGATGATATACTGGTGGTAGATTTTCTCAagtaa
Protein Sequence: MLTEQNMIMELTDSSDTMPIGFITTDDGQTLLAVGEHEDGILEFMATPITLMPQNNVVSPALIKTMDGSFILHPPVLQLNVEGLPGTVMQQTNLLPLIQHFENGSSVTEQLKVQDTNECVVTESLLPITRDNSDVLSIKEQSTIDNHAKSRSTPVSAIQNVCNRSPGRPKKTGITSQNIQSLKCDICRQEFTKQTVYRRHMENHAEEKPHRCPKCPASFNIPTNFTLHMATHNTGDPKCPECGRKYARMASLKSHMLLHEKEENLFCTECEDAFSTKAQLDAHLKLHGEKWASEDVRKCKLCNKQFVQPALYRMHIREHYRLQTKIVKQTKRGTKHKTMYKCTICLKIFQKPSQLMRHIRVHTGEKPFKCTICNRAFTQKSSLQIHTWQHKGIRPHTCSLCNAKFSQKGNLKAHILRVHNAPEGEPTYACSFCSCIFKKLGSLNGHIKRMHSVSAEESAVKPTEDNSSISSEADMRATVDSVISQLASLESAVSNTTDSIRPTTLNVEENDILQQALKNSGLPNKNEVISKAGTTEPKKTDSPTSYVTLLDRTAGGTSKKYLTIKQRCIGNVRWYACSYCPKEFKKPSDLIRHLRVHTQEKPFKCMYCVRSFALKSTMIAHERTHTGVKKYACESCDKTFACHSSLTAHMRLHTKPHKCNICDKSFSTNNILKNHVKSHTQEKSKISPEAQSLVPQVVLQEPLVISDTGNKISVAQVQSKQKQLYESVGVARPHECFVCHAAFRKVSHLKQHFRRHTGERPYKCSKCDRRFTSNSVLKSHLHTHEDARPYSCSVCDVKFSTQSSMKRHLVTHSNKRPYMCPYCHKTFKTYVNCRKHIKRKHGLELAQRQLEEQKTQEQKESQPLSDDKTVIPALSENITLTEDMEVSFQPQMAPDFTQAFSDQFHQNISEKEKSFLLTDNTMPSIVNQNLSLDTNLTSQTLHADETGTITLPHYSGDQTFTPESMRELEETLNLKQLLNIGVNLGLETNNLPRQMDETNTSSLNNSREQPVLNIIYEHNKNMESSSNTIFMPQFDSLDMNQITLQTDNDIDIGLNPSNVTNISNILPRSVRSNQQEDQQAIPVSTISNIDTSQITRNTHLVVINSKENCSELMRLSQVCPSKYSKVIAKADTTNESEIQGVNEHEKTTQKSNSVSYENEDEKNSLFMKNFQSAMNSEILISSDMDNPIKISECNTLLQCHMCGNQGFTTEKLKEHLRSHRGAKEYECSECSQRFCTNGGLSRHMKMHTNKQRWKCTTCQKILGSKLQLKSHSKMHTESWNVSSMESDSSQKELTSSNSGLPSIPTLDVPINADSSVSEKVLMDAVAERKSMDHADENVEKKETREYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYQCEHCSKSFAVKCTLDSHMKVHTGKKTFCCHVCSSMFATKGSLKVHMRLHTGSKPFKCPVCDLRFRTSGHKKVHMLKHAREHKGGTKRKPKHSKIAAVAEAVANLEKIGNNSVENTSMTTTAITATTTTITTTTATTVTNVEATPSQNLDYSSLEQTVNLGTTIQLSNQIAFNNTDATTILNNNSNMLSVNENNELVQFLLANVGLVTIQTDDPLLTQSATNSSDTISAGVPTNVIELVNQDPFQEACNLNNANHVVITSQVPTETTIANATNATVLAMNNYMPPVSMVQIQNQSVNGIDGVSEIKMSDQTTATTAKASPQSSRKECDVCGKTFMKPYQMERHKRIHTGERPYKCEQCGKSFAQKFTLQLHQKHHTGDRPYSCPHCKHLFTQKCNLQTHMKRVHQLVMLDVKKLKSGQQMLGALLQDNQNNDAKLVSLDDILVVDFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523538;
90% Identity: iTF_01229178;
80% Identity: -