Phis042636.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- tfip11_1
- Assembly
- GCA_963924545.1
- Location
- OZ004699.1:35506295-35519679[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-99 2.1e-94 317.8 10.3 1 275 408 679 408 679 0.98 2 2 0.15 4.2e+03 -1.3 0.1 158 270 692 719 683 732 0.51
Sequence Information
- Coding Sequence
- ATGTCGGAAGATGAATTGGAAAAATTTGAAATCACAGAATACGATCTAGAAAATGAATTTAACATACATAGAAATCGAAACCGTAAAAAAAATAGCAAACATCATCAGATTTATGGTATTTGGGCCGATGATAGTGACAATGAAGCAGATTCTGGAATTAAGAGTTATATGTCGAAAAGTCGACCTAAAAACTATTCTGCGCCAATTGATTTTGTCGCAGGCGGGGTGCACCAAGCTGGAAAAAAGGTGAAACAGGAGGATAATATTAAAGATGAGAAGGAGGAATCGGAAGATGAAGCACCCACCTCTTCATTCAAAACTAGAGATAGTTCTGATGAATCTGAAGAAGAACGTCCAAGAGCAGGTTTTGGtactgcaaaattaaaaaaatcatcgCAATCTACAGTGACGGAAATTACTGGTGATATAGCAGGCTTAAGACGCAAAAATACTCTGAATCCATCATTGATCAATCAAGGAGTAGGTCACTGGGAAAAACATACAAAGGGTATAGGAGCAAAACTCCTACTACAAATGGGTTTCCAGCCAGGAAAAGGTCTAGGAAAGGACTTGCAGGGAATATCAGCACCCGTGGAGGCACATTTAAGGAAAGGCAGGGGAGCCATTGGGGCTTATGGCCCTGAGAAACTCGCCAGTATTCCAAAAATAAAGGAAAGGGCTTTTAAATCGGACAGAGATGAAGAGCAGAATGAGGAGGATATCAAGGGAGAATCTAAATGGAAGAAAAGCGAATCTTTAAAGAATAAGACTCGATATTATTATCGCAGTGTAGATGATGTTATTGAAAAAGGTAAACGTCCTGGAGCTTATAGAAATTTGGGATCAGCAAGtgAGCTCAGCAAAGTCAAGGTGATCGATATGACGGGCCCCCAACAGAGGGTACTAAGTGGTTACCATGCACTCAGTGGACTAAAGGCGCCCCCAGGAGTGGAGCATTTCGAGGACGTCGTGCACAAGAAGTGCTCCAATTTCGCCCTACCCGAAATCCAGCACAATCTTGATCTATTAGTGGACATGTGTGAACAGgaTATCATAAGGATTGACAGGAATACAAGGTATAACGAGGACAAACTCACGGCTCTAAAACAGGAGGAGAACTCTTTGAAGGAAGTGATAAGGTCTGAGGAAGGTCTTATAGAAAATTTGAAAGACGTGATGGAGATTGTCGAGAAACTGATGAATCCCACTCAGGGATATTCTTTGGGCCAAATTGGTGCTATTTTCAGGAAGTTGCAGgagGAGCACTTTGATGAATACTGCCGTTACGAATTGGGAGAATTGGCGCCAGGCCTCATCGGCCCCCTCTTAACTTCTGCCATGGCAAATTGGAACTCCCTGGCTCAGGCGTCTCAGTATGTGGACGTATTCGGTCAGTGGCGTGACATTTTGGAGGGGCCCAGGCAGCGTGGGAACCCAGAAGGTAATAATATGGGAATACAGCCCTATGATAGTCTCATATGGCACACTTGGATGCCTGTTATGAGAACTTGTGTTAGTTCTTGGAATCCGCGCGATTGTGATCCGTTGATAATGTTGATGGAGACATGGAAGCCGCTACTACCCCAGTGGATCGTCGACAATATATTCGACCAGCTCATAATGCCGAAATTGCTGGCAGAAGTCAACACTTGGAACCCGCTGACTGACACGATACCCATTCACGTCTGGGTGCACCCGTGGATCCCACTTCTGGACGCCAAACTTCAGACCACCATCTACCCCGTCATCCAGGAGAAGCTGGGCACGGCCCTGAGCAACTGGCACCCGTCCGACCGCTCGGCTAAGCTGATGCTGCAGCCTTGGCAGAGGGTGCTATCACAGGGGGCTTTTGTCGCTTTTTTGCTGAAGCACATCGTGCCTAAGCTACAGGTCTGCATGCAGAACCTCGTCATAAACCCTCACCAGCAGCATTTAGATCCGTGGAACTGGGTGATGGACTGGAACGGCATGCTGTCTGTAGCCAACATGACACTAATCTTGGACAAGTTCTTCTTCCCCAGGTGGCTGCAGACGCTAGCCATGTGGCTCAATCACAACCCCAACTACGCGCAGGTCACGGAGTGGTACTCGGGATGGAAGCGAATGCTGAGCGAAGAGCTCCTCAGCCAGCCGACCATCAAAGagaATTTCCATAAGGCGCTAGAGATGATGAACAGGGCCGTCAGCATTGCACAACAACCAGGTGCGAAAGAATCCATCTCGTACTTGAAGAATATTGAAGCCAACGGGCTAACAGCACCGCCTCCCCCACCACCAAGAGTTGAGACTTTGGCAGAAGCAGTTAGAACAGCAGCAAAAATTCCTCAGGGATTCAAAGATCTGGTGACTAAGCGATGCGAGGAACGTGGTATTATTTTCGTGCCGATGGCGAACAAGTACCACGAAGCCAAGCAAGTGTACCGCATCGGCTCAAATGGCATGCAGTGCTTCATCGACAGAAACGTGATATTCTACTCACAGAACAACTCTACGTGGCTGCCCACGTCTCTAAACAGGCTGCTGGACCTTGCTTAA
- Protein Sequence
- MSEDELEKFEITEYDLENEFNIHRNRNRKKNSKHHQIYGIWADDSDNEADSGIKSYMSKSRPKNYSAPIDFVAGGVHQAGKKVKQEDNIKDEKEESEDEAPTSSFKTRDSSDESEEERPRAGFGTAKLKKSSQSTVTEITGDIAGLRRKNTLNPSLINQGVGHWEKHTKGIGAKLLLQMGFQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKLASIPKIKERAFKSDRDEEQNEEDIKGESKWKKSESLKNKTRYYYRSVDDVIEKGKRPGAYRNLGSASELSKVKVIDMTGPQQRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNFALPEIQHNLDLLVDMCEQDIIRIDRNTRYNEDKLTALKQEENSLKEVIRSEEGLIENLKDVMEIVEKLMNPTQGYSLGQIGAIFRKLQEEHFDEYCRYELGELAPGLIGPLLTSAMANWNSLAQASQYVDVFGQWRDILEGPRQRGNPEGNNMGIQPYDSLIWHTWMPVMRTCVSSWNPRDCDPLIMLMETWKPLLPQWIVDNIFDQLIMPKLLAEVNTWNPLTDTIPIHVWVHPWIPLLDAKLQTTIYPVIQEKLGTALSNWHPSDRSAKLMLQPWQRVLSQGAFVAFLLKHIVPKLQVCMQNLVINPHQQHLDPWNWVMDWNGMLSVANMTLILDKFFFPRWLQTLAMWLNHNPNYAQVTEWYSGWKRMLSEELLSQPTIKENFHKALEMMNRAVSIAQQPGAKESISYLKNIEANGLTAPPPPPPRVETLAEAVRTAAKIPQGFKDLVTKRCEERGIIFVPMANKYHEAKQVYRIGSNGMQCFIDRNVIFYSQNNSTWLPTSLNRLLDLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289988;
- 90% Identity
- -
- 80% Identity
- -